Protein–RNA interactions for Protein: Q9NXR1

NDE1, Nuclear distribution protein nudE homolog 1, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NDE1Q9NXR1 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
NDE1Q9NXR1 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
NDE1Q9NXR1 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC16.08■□□□□ 0.16
NDE1Q9NXR1 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC16.08■□□□□ 0.16
NDE1Q9NXR1 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC16.08■□□□□ 0.16
NDE1Q9NXR1 DANCR-204ENST00000444958 709 ntTSL 3 BASIC16.08■□□□□ 0.16
NDE1Q9NXR1 AC092597.1-201ENST00000487352 616 ntBASIC16.08■□□□□ 0.16
NDE1Q9NXR1 COX11P1-201ENST00000489116 835 ntBASIC16.08■□□□□ 0.16
NDE1Q9NXR1 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC16.08■□□□□ 0.16
NDE1Q9NXR1 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
NDE1Q9NXR1 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC16.08■□□□□ 0.16
NDE1Q9NXR1 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC16.08■□□□□ 0.16
NDE1Q9NXR1 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
NDE1Q9NXR1 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
NDE1Q9NXR1 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
NDE1Q9NXR1 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
NDE1Q9NXR1 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
NDE1Q9NXR1 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
NDE1Q9NXR1 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
NDE1Q9NXR1 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
NDE1Q9NXR1 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC16.08■□□□□ 0.16
NDE1Q9NXR1 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
NDE1Q9NXR1 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC16.08■□□□□ 0.16
NDE1Q9NXR1 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
NDE1Q9NXR1 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
NDE1Q9NXR1 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
NDE1Q9NXR1 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
NDE1Q9NXR1 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
NDE1Q9NXR1 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC16.07■□□□□ 0.16
NDE1Q9NXR1 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC16.07■□□□□ 0.16
NDE1Q9NXR1 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
NDE1Q9NXR1 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC16.07■□□□□ 0.16
NDE1Q9NXR1 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC16.07■□□□□ 0.16
NDE1Q9NXR1 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC16.07■□□□□ 0.16
NDE1Q9NXR1 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
NDE1Q9NXR1 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC16.07■□□□□ 0.16
NDE1Q9NXR1 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC16.07■□□□□ 0.16
NDE1Q9NXR1 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC16.07■□□□□ 0.16
NDE1Q9NXR1 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
NDE1Q9NXR1 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
NDE1Q9NXR1 CD70-202ENST00000423145 881 ntTSL 2 BASIC16.07■□□□□ 0.16
NDE1Q9NXR1 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC16.07■□□□□ 0.16
NDE1Q9NXR1 POU5F1P6-201ENST00000466990 990 ntBASIC16.07■□□□□ 0.16
NDE1Q9NXR1 DENND3-207ENST00000518347 850 ntTSL 2 BASIC16.07■□□□□ 0.16
NDE1Q9NXR1 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC16.07■□□□□ 0.16
NDE1Q9NXR1 AL441883.1-201ENST00000566170 1045 ntBASIC16.07■□□□□ 0.16
NDE1Q9NXR1 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC16.07■□□□□ 0.16
NDE1Q9NXR1 AL353801.3-201ENST00000609898 542 ntBASIC16.07■□□□□ 0.16
NDE1Q9NXR1 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC16.07■□□□□ 0.16
NDE1Q9NXR1 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
NDE1Q9NXR1 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
NDE1Q9NXR1 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
NDE1Q9NXR1 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC16.07■□□□□ 0.16
NDE1Q9NXR1 LINC01568-207ENST00000641790 1380 ntBASIC16.07■□□□□ 0.16
NDE1Q9NXR1 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
NDE1Q9NXR1 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC16.07■□□□□ 0.16
NDE1Q9NXR1 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
NDE1Q9NXR1 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
NDE1Q9NXR1 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
NDE1Q9NXR1 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
NDE1Q9NXR1 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
NDE1Q9NXR1 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
NDE1Q9NXR1 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
NDE1Q9NXR1 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
NDE1Q9NXR1 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
NDE1Q9NXR1 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
NDE1Q9NXR1 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC16.07■□□□□ 0.16
NDE1Q9NXR1 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
NDE1Q9NXR1 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
NDE1Q9NXR1 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
NDE1Q9NXR1 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC16.06■□□□□ 0.16
NDE1Q9NXR1 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
NDE1Q9NXR1 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC16.06■□□□□ 0.16
NDE1Q9NXR1 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NDE1Q9NXR1 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC16.06■□□□□ 0.16
NDE1Q9NXR1 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC16.06■□□□□ 0.16
NDE1Q9NXR1 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC16.06■□□□□ 0.16
NDE1Q9NXR1 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
NDE1Q9NXR1 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
NDE1Q9NXR1 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC16.06■□□□□ 0.16
NDE1Q9NXR1 HARS-204ENST00000438307 1789 ntTSL 2 BASIC16.06■□□□□ 0.16
NDE1Q9NXR1 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NDE1Q9NXR1 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC16.06■□□□□ 0.16
NDE1Q9NXR1 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NDE1Q9NXR1 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NDE1Q9NXR1 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
NDE1Q9NXR1 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC16.06■□□□□ 0.16
NDE1Q9NXR1 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
NDE1Q9NXR1 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC16.06■□□□□ 0.16
NDE1Q9NXR1 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
NDE1Q9NXR1 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NDE1Q9NXR1 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC16.06■□□□□ 0.16
NDE1Q9NXR1 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC16.06■□□□□ 0.16
NDE1Q9NXR1 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NDE1Q9NXR1 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
NDE1Q9NXR1 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
NDE1Q9NXR1 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC16.06■□□□□ 0.16
NDE1Q9NXR1 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC16.06■□□□□ 0.16
NDE1Q9NXR1 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC16.06■□□□□ 0.16
NDE1Q9NXR1 TMA16-209ENST00000513272 803 ntTSL 2 BASIC16.06■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 179.1 ms