Protein–RNA interactions for Protein: Q9H347

UBQLN3, Ubiquilin-3, humanhuman

Predictions only

Length 655 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBQLN3Q9H347 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC15.35■□□□□ 0.05
UBQLN3Q9H347 MIR4515-201ENST00000584082 81 ntBASIC15.35■□□□□ 0.05
UBQLN3Q9H347 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC15.35■□□□□ 0.05
UBQLN3Q9H347 AC068137.2-201ENST00000605408 478 ntBASIC15.35■□□□□ 0.05
UBQLN3Q9H347 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
UBQLN3Q9H347 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC15.35■□□□□ 0.05
UBQLN3Q9H347 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC15.35■□□□□ 0.05
UBQLN3Q9H347 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
UBQLN3Q9H347 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC15.35■□□□□ 0.05
UBQLN3Q9H347 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
UBQLN3Q9H347 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
UBQLN3Q9H347 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
UBQLN3Q9H347 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC15.35■□□□□ 0.05
UBQLN3Q9H347 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC15.35■□□□□ 0.05
UBQLN3Q9H347 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC15.35■□□□□ 0.05
UBQLN3Q9H347 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC15.35■□□□□ 0.05
UBQLN3Q9H347 LINC00895-201ENST00000629028 1637 ntBASIC15.35■□□□□ 0.05
UBQLN3Q9H347 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC15.35■□□□□ 0.05
UBQLN3Q9H347 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
UBQLN3Q9H347 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
UBQLN3Q9H347 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
UBQLN3Q9H347 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC15.34■□□□□ 0.05
UBQLN3Q9H347 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
UBQLN3Q9H347 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
UBQLN3Q9H347 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC15.34■□□□□ 0.05
UBQLN3Q9H347 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
UBQLN3Q9H347 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
UBQLN3Q9H347 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
UBQLN3Q9H347 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
UBQLN3Q9H347 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
UBQLN3Q9H347 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC15.34■□□□□ 0.05
UBQLN3Q9H347 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
UBQLN3Q9H347 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC15.34■□□□□ 0.05
UBQLN3Q9H347 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
UBQLN3Q9H347 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC15.34■□□□□ 0.05
UBQLN3Q9H347 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC15.34■□□□□ 0.05
UBQLN3Q9H347 AL031432.2-201ENST00000566714 459 ntBASIC15.34■□□□□ 0.05
UBQLN3Q9H347 AL928711.1-201ENST00000570165 459 ntBASIC15.34■□□□□ 0.05
UBQLN3Q9H347 AC091167.2-201ENST00000579581 588 ntBASIC15.34■□□□□ 0.05
UBQLN3Q9H347 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
UBQLN3Q9H347 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
UBQLN3Q9H347 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
UBQLN3Q9H347 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
UBQLN3Q9H347 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
UBQLN3Q9H347 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
UBQLN3Q9H347 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
UBQLN3Q9H347 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
UBQLN3Q9H347 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
UBQLN3Q9H347 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
UBQLN3Q9H347 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
UBQLN3Q9H347 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
UBQLN3Q9H347 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC15.34■□□□□ 0.05
UBQLN3Q9H347 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
UBQLN3Q9H347 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
UBQLN3Q9H347 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
UBQLN3Q9H347 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
UBQLN3Q9H347 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
UBQLN3Q9H347 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
UBQLN3Q9H347 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC15.33■□□□□ 0.04
UBQLN3Q9H347 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
UBQLN3Q9H347 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
UBQLN3Q9H347 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
UBQLN3Q9H347 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
UBQLN3Q9H347 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC15.33■□□□□ 0.04
UBQLN3Q9H347 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC15.33■□□□□ 0.04
UBQLN3Q9H347 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC15.33■□□□□ 0.04
UBQLN3Q9H347 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC15.33■□□□□ 0.04
UBQLN3Q9H347 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC15.33■□□□□ 0.04
UBQLN3Q9H347 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
UBQLN3Q9H347 AP002472.1-201ENST00000577490 586 ntBASIC15.33■□□□□ 0.04
UBQLN3Q9H347 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC15.33■□□□□ 0.04
UBQLN3Q9H347 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC15.33■□□□□ 0.04
UBQLN3Q9H347 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC15.33■□□□□ 0.04
UBQLN3Q9H347 AL078644.1-201ENST00000609881 752 ntBASIC15.33■□□□□ 0.04
UBQLN3Q9H347 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
UBQLN3Q9H347 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
UBQLN3Q9H347 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
UBQLN3Q9H347 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
UBQLN3Q9H347 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
UBQLN3Q9H347 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC15.33■□□□□ 0.04
UBQLN3Q9H347 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
UBQLN3Q9H347 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
UBQLN3Q9H347 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC15.33■□□□□ 0.04
UBQLN3Q9H347 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
UBQLN3Q9H347 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
UBQLN3Q9H347 KRT8P49-201ENST00000604166 1432 ntBASIC15.33■□□□□ 0.04
UBQLN3Q9H347 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC15.33■□□□□ 0.04
UBQLN3Q9H347 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC15.33■□□□□ 0.04
UBQLN3Q9H347 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
UBQLN3Q9H347 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC15.33■□□□□ 0.04
UBQLN3Q9H347 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
UBQLN3Q9H347 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
UBQLN3Q9H347 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
UBQLN3Q9H347 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
UBQLN3Q9H347 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC15.32■□□□□ 0.04
UBQLN3Q9H347 AC006538.1-201ENST00000567905 1585 ntBASIC15.32■□□□□ 0.04
UBQLN3Q9H347 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
UBQLN3Q9H347 AC092919.2-201ENST00000623631 1645 ntBASIC15.32■□□□□ 0.04
UBQLN3Q9H347 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
UBQLN3Q9H347 AL162727.3-201ENST00000635661 2787 ntBASIC15.32■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms