Protein–RNA interactions for Protein: Q9H270

VPS11, Vacuolar protein sorting-associated protein 11 homolog, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11Q9H270 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS11Q9H270 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VPS11Q9H270 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
VPS11Q9H270 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
VPS11Q9H270 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC16.7■□□□□ 0.26
VPS11Q9H270 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS11Q9H270 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
VPS11Q9H270 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS11Q9H270 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC16.69■□□□□ 0.26
VPS11Q9H270 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS11Q9H270 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS11Q9H270 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VPS11Q9H270 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS11Q9H270 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS11Q9H270 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS11Q9H270 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS11Q9H270 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VPS11Q9H270 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC16.69■□□□□ 0.26
VPS11Q9H270 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
VPS11Q9H270 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC16.69■□□□□ 0.26
VPS11Q9H270 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC16.69■□□□□ 0.26
VPS11Q9H270 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
VPS11Q9H270 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VPS11Q9H270 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS11Q9H270 TOP3BP1-201ENST00000420768 1380 ntBASIC16.69■□□□□ 0.26
VPS11Q9H270 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC16.69■□□□□ 0.26
VPS11Q9H270 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS11Q9H270 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC16.69■□□□□ 0.26
VPS11Q9H270 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC16.69■□□□□ 0.26
VPS11Q9H270 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC16.69■□□□□ 0.26
VPS11Q9H270 ATP5G2P1-201ENST00000433580 426 ntBASIC16.69■□□□□ 0.26
VPS11Q9H270 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC16.69■□□□□ 0.26
VPS11Q9H270 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC16.69■□□□□ 0.26
VPS11Q9H270 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC16.69■□□□□ 0.26
VPS11Q9H270 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
VPS11Q9H270 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC16.69■□□□□ 0.26
VPS11Q9H270 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS11Q9H270 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS11Q9H270 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS11Q9H270 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
VPS11Q9H270 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS11Q9H270 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC16.69■□□□□ 0.26
VPS11Q9H270 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VPS11Q9H270 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
VPS11Q9H270 SUPT20HL2-201ENST00000486479 2409 ntBASIC16.69■□□□□ 0.26
VPS11Q9H270 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC16.69■□□□□ 0.26
VPS11Q9H270 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC16.69■□□□□ 0.26
VPS11Q9H270 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS11Q9H270 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
VPS11Q9H270 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VPS11Q9H270 AC092850.2-201ENST00000623821 2697 ntBASIC16.69■□□□□ 0.26
VPS11Q9H270 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC16.69■□□□□ 0.26
VPS11Q9H270 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VPS11Q9H270 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VPS11Q9H270 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS11Q9H270 AC023824.1-201ENST00000562945 2975 ntBASIC16.68■□□□□ 0.26
VPS11Q9H270 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS11Q9H270 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VPS11Q9H270 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
VPS11Q9H270 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
VPS11Q9H270 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS11Q9H270 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC16.68■□□□□ 0.26
VPS11Q9H270 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC16.68■□□□□ 0.26
VPS11Q9H270 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC16.68■□□□□ 0.26
VPS11Q9H270 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC16.68■□□□□ 0.26
VPS11Q9H270 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS11Q9H270 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC16.68■□□□□ 0.26
VPS11Q9H270 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS11Q9H270 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC16.68■□□□□ 0.26
VPS11Q9H270 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC16.68■□□□□ 0.26
VPS11Q9H270 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC16.68■□□□□ 0.26
VPS11Q9H270 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC16.68■□□□□ 0.26
VPS11Q9H270 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS11Q9H270 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS11Q9H270 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS11Q9H270 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC16.68■□□□□ 0.26
VPS11Q9H270 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS11Q9H270 IGHV3OR16-7-201ENST00000604106 360 ntBASIC16.68■□□□□ 0.26
VPS11Q9H270 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC16.68■□□□□ 0.26
VPS11Q9H270 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC16.68■□□□□ 0.26
VPS11Q9H270 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC16.68■□□□□ 0.26
VPS11Q9H270 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC16.68■□□□□ 0.26
VPS11Q9H270 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
VPS11Q9H270 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC16.68■□□□□ 0.26
VPS11Q9H270 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS11Q9H270 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS11Q9H270 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS11Q9H270 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VPS11Q9H270 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC16.68■□□□□ 0.26
VPS11Q9H270 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VPS11Q9H270 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC16.68■□□□□ 0.26
VPS11Q9H270 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC16.68■□□□□ 0.26
VPS11Q9H270 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS11Q9H270 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS11Q9H270 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
VPS11Q9H270 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
VPS11Q9H270 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS11Q9H270 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
VPS11Q9H270 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VPS11Q9H270 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC16.67■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms