Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.8■□□□□ 0.44
LRCH3Q96II8 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC17.8■□□□□ 0.44
LRCH3Q96II8 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
LRCH3Q96II8 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LRCH3Q96II8 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LRCH3Q96II8 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LRCH3Q96II8 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LRCH3Q96II8 FAM220BP-201ENST00000377689 816 ntBASIC17.8■□□□□ 0.44
LRCH3Q96II8 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LRCH3Q96II8 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC17.8■□□□□ 0.44
LRCH3Q96II8 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LRCH3Q96II8 NUS1P3-201ENST00000423502 862 ntBASIC17.8■□□□□ 0.44
LRCH3Q96II8 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC17.8■□□□□ 0.44
LRCH3Q96II8 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC17.8■□□□□ 0.44
LRCH3Q96II8 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC17.8■□□□□ 0.44
LRCH3Q96II8 MAX-210ENST00000555419 765 ntTSL 5 BASIC17.8■□□□□ 0.44
LRCH3Q96II8 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC17.8■□□□□ 0.44
LRCH3Q96II8 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC17.8■□□□□ 0.44
LRCH3Q96II8 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LRCH3Q96II8 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LRCH3Q96II8 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
LRCH3Q96II8 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LRCH3Q96II8 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
LRCH3Q96II8 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
LRCH3Q96II8 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LRCH3Q96II8 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC17.8■□□□□ 0.44
LRCH3Q96II8 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
LRCH3Q96II8 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LRCH3Q96II8 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
LRCH3Q96II8 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC17.79■□□□□ 0.44
LRCH3Q96II8 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
LRCH3Q96II8 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
LRCH3Q96II8 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LRCH3Q96II8 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
LRCH3Q96II8 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LRCH3Q96II8 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
LRCH3Q96II8 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LRCH3Q96II8 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
LRCH3Q96II8 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
LRCH3Q96II8 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
LRCH3Q96II8 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
LRCH3Q96II8 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC17.79■□□□□ 0.44
LRCH3Q96II8 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC17.79■□□□□ 0.44
LRCH3Q96II8 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
LRCH3Q96II8 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC17.79■□□□□ 0.44
LRCH3Q96II8 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC17.79■□□□□ 0.44
LRCH3Q96II8 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC17.79■□□□□ 0.44
LRCH3Q96II8 ACTG1P17-201ENST00000558391 1119 ntBASIC17.79■□□□□ 0.44
LRCH3Q96II8 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC17.79■□□□□ 0.44
LRCH3Q96II8 AC010328.2-201ENST00000597698 1111 ntBASIC17.79■□□□□ 0.44
LRCH3Q96II8 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
LRCH3Q96II8 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC17.79■□□□□ 0.44
LRCH3Q96II8 SPCS2P2-201ENST00000603270 608 ntBASIC17.79■□□□□ 0.44
LRCH3Q96II8 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
LRCH3Q96II8 CLK3P2-201ENST00000427566 1453 ntBASIC17.79■□□□□ 0.44
LRCH3Q96II8 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC17.79■□□□□ 0.44
LRCH3Q96II8 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC17.79■□□□□ 0.44
LRCH3Q96II8 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
LRCH3Q96II8 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LRCH3Q96II8 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
LRCH3Q96II8 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC17.79■□□□□ 0.44
LRCH3Q96II8 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC17.79■□□□□ 0.44
LRCH3Q96II8 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
LRCH3Q96II8 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
LRCH3Q96II8 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC17.78■□□□□ 0.44
LRCH3Q96II8 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LRCH3Q96II8 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
LRCH3Q96II8 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC17.78■□□□□ 0.44
LRCH3Q96II8 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LRCH3Q96II8 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LRCH3Q96II8 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LRCH3Q96II8 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LRCH3Q96II8 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC17.78■□□□□ 0.44
LRCH3Q96II8 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LRCH3Q96II8 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC17.78■□□□□ 0.44
LRCH3Q96II8 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
LRCH3Q96II8 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC17.78■□□□□ 0.44
LRCH3Q96II8 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LRCH3Q96II8 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LRCH3Q96II8 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC17.78■□□□□ 0.44
LRCH3Q96II8 RPS2P36-201ENST00000456516 831 ntBASIC17.78■□□□□ 0.44
LRCH3Q96II8 AC020763.1-201ENST00000567186 551 ntTSL 4 BASIC17.78■□□□□ 0.44
LRCH3Q96II8 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LRCH3Q96II8 AC020765.3-201ENST00000613051 740 ntBASIC17.78■□□□□ 0.44
LRCH3Q96II8 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LRCH3Q96II8 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC17.78■□□□□ 0.44
LRCH3Q96II8 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LRCH3Q96II8 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LRCH3Q96II8 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LRCH3Q96II8 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LRCH3Q96II8 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LRCH3Q96II8 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC17.78■□□□□ 0.44
LRCH3Q96II8 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LRCH3Q96II8 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LRCH3Q96II8 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC17.77■□□□□ 0.44
LRCH3Q96II8 AL096828.2-201ENST00000567259 1965 ntBASIC17.77■□□□□ 0.44
LRCH3Q96II8 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
LRCH3Q96II8 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
LRCH3Q96II8 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
LRCH3Q96II8 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC17.77■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 50.1 ms