Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TTC28Q96AY4 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TTC28Q96AY4 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC16.45■□□□□ 0.22
TTC28Q96AY4 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TTC28Q96AY4 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC16.44■□□□□ 0.22
TTC28Q96AY4 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC16.44■□□□□ 0.22
TTC28Q96AY4 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TTC28Q96AY4 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC16.44■□□□□ 0.22
TTC28Q96AY4 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC16.44■□□□□ 0.22
TTC28Q96AY4 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
TTC28Q96AY4 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TTC28Q96AY4 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC16.44■□□□□ 0.22
TTC28Q96AY4 ODF4-201ENST00000328248 1156 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
TTC28Q96AY4 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC16.44■□□□□ 0.22
TTC28Q96AY4 FAU-202ENST00000434372 533 ntTSL 2 BASIC16.44■□□□□ 0.22
TTC28Q96AY4 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC16.44■□□□□ 0.22
TTC28Q96AY4 CRTC3-AS1-202ENST00000559531 657 ntTSL 3 BASIC16.44■□□□□ 0.22
TTC28Q96AY4 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
TTC28Q96AY4 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TTC28Q96AY4 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TTC28Q96AY4 Z97205.2-201ENST00000564697 1639 ntBASIC16.44■□□□□ 0.22
TTC28Q96AY4 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TTC28Q96AY4 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TTC28Q96AY4 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC16.44■□□□□ 0.22
TTC28Q96AY4 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TTC28Q96AY4 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC16.44■□□□□ 0.22
TTC28Q96AY4 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
TTC28Q96AY4 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
TTC28Q96AY4 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
TTC28Q96AY4 ZFAND2B-205ENST00000409319 771 ntTSL 2 BASIC16.44■□□□□ 0.22
TTC28Q96AY4 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
TTC28Q96AY4 IKBKB-212ENST00000519735 1166 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
TTC28Q96AY4 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC16.44■□□□□ 0.22
TTC28Q96AY4 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC16.44■□□□□ 0.22
TTC28Q96AY4 RNF146-211ENST00000609447 607 ntTSL 4 BASIC16.44■□□□□ 0.22
TTC28Q96AY4 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC16.44■□□□□ 0.22
TTC28Q96AY4 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC16.44■□□□□ 0.22
TTC28Q96AY4 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
TTC28Q96AY4 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC16.44■□□□□ 0.22
TTC28Q96AY4 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TTC28Q96AY4 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
TTC28Q96AY4 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TTC28Q96AY4 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC16.44■□□□□ 0.22
TTC28Q96AY4 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TTC28Q96AY4 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TTC28Q96AY4 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
TTC28Q96AY4 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TTC28Q96AY4 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
TTC28Q96AY4 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC16.43■□□□□ 0.22
TTC28Q96AY4 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
TTC28Q96AY4 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
TTC28Q96AY4 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC16.43■□□□□ 0.22
TTC28Q96AY4 AC012618.1-201ENST00000461223 412 ntBASIC16.43■□□□□ 0.22
TTC28Q96AY4 DNM1P30-201ENST00000563586 452 ntBASIC16.43■□□□□ 0.22
TTC28Q96AY4 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TTC28Q96AY4 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
TTC28Q96AY4 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
TTC28Q96AY4 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TTC28Q96AY4 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC16.43■□□□□ 0.22
TTC28Q96AY4 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
TTC28Q96AY4 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
TTC28Q96AY4 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TTC28Q96AY4 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC16.43■□□□□ 0.22
TTC28Q96AY4 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TTC28Q96AY4 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
TTC28Q96AY4 GAD1-201ENST00000344257 1029 ntTSL 5 BASIC16.43■□□□□ 0.22
TTC28Q96AY4 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC16.43■□□□□ 0.22
TTC28Q96AY4 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC16.43■□□□□ 0.22
TTC28Q96AY4 VDAC1P7-201ENST00000462417 847 ntBASIC16.43■□□□□ 0.22
TTC28Q96AY4 AL022344.2-201ENST00000568976 968 ntBASIC16.43■□□□□ 0.22
TTC28Q96AY4 ZSCAN10-205ENST00000572548 618 ntTSL 3 BASIC16.43■□□□□ 0.22
TTC28Q96AY4 PRMT5-AS1-206ENST00000599580 847 ntTSL 5 BASIC16.43■□□□□ 0.22
TTC28Q96AY4 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC16.43■□□□□ 0.22
TTC28Q96AY4 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TTC28Q96AY4 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TTC28Q96AY4 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TTC28Q96AY4 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
TTC28Q96AY4 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
TTC28Q96AY4 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
TTC28Q96AY4 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC16.43■□□□□ 0.22
TTC28Q96AY4 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
TTC28Q96AY4 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TTC28Q96AY4 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
TTC28Q96AY4 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TTC28Q96AY4 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
TTC28Q96AY4 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TTC28Q96AY4 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TTC28Q96AY4 AC026316.1-201ENST00000398900 414 ntBASIC16.42■□□□□ 0.22
TTC28Q96AY4 TISP43-201ENST00000409793 538 ntTSL 4 BASIC16.42■□□□□ 0.22
TTC28Q96AY4 LINC01056-201ENST00000455711 1234 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TTC28Q96AY4 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC16.42■□□□□ 0.22
TTC28Q96AY4 RN7SL774P-201ENST00000577467 290 ntBASIC16.42■□□□□ 0.22
TTC28Q96AY4 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TTC28Q96AY4 Metazoa_SRP.65-201ENST00000615602 264 ntBASIC16.42■□□□□ 0.22
TTC28Q96AY4 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TTC28Q96AY4 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC16.42■□□□□ 0.22
TTC28Q96AY4 PC-204ENST00000524491 1714 ntTSL 2 BASIC16.42■□□□□ 0.22
TTC28Q96AY4 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TTC28Q96AY4 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TTC28Q96AY4 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms