Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
SYNE3Q6ZMZ3 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
SYNE3Q6ZMZ3 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
SYNE3Q6ZMZ3 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC19.48■□□□□ 0.71
SYNE3Q6ZMZ3 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC19.48■□□□□ 0.71
SYNE3Q6ZMZ3 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC19.48■□□□□ 0.71
SYNE3Q6ZMZ3 AP000347.1-202ENST00000435868 847 ntBASIC19.48■□□□□ 0.71
SYNE3Q6ZMZ3 AC002347.1-201ENST00000569543 541 ntBASIC19.48■□□□□ 0.71
SYNE3Q6ZMZ3 CD7-202ENST00000578509 925 ntTSL 3 BASIC19.48■□□□□ 0.71
SYNE3Q6ZMZ3 AL009183.1-201ENST00000603760 355 ntBASIC19.48■□□□□ 0.71
SYNE3Q6ZMZ3 AC020765.3-201ENST00000613051 740 ntBASIC19.48■□□□□ 0.71
SYNE3Q6ZMZ3 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC19.48■□□□□ 0.71
SYNE3Q6ZMZ3 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SYNE3Q6ZMZ3 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SYNE3Q6ZMZ3 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC19.48■□□□□ 0.71
SYNE3Q6ZMZ3 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SYNE3Q6ZMZ3 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC19.48■□□□□ 0.71
SYNE3Q6ZMZ3 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SYNE3Q6ZMZ3 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SYNE3Q6ZMZ3 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SYNE3Q6ZMZ3 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC19.48■□□□□ 0.71
SYNE3Q6ZMZ3 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
SYNE3Q6ZMZ3 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
SYNE3Q6ZMZ3 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SYNE3Q6ZMZ3 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SYNE3Q6ZMZ3 GPAA1P2-202ENST00000606848 1787 ntBASIC19.47■□□□□ 0.71
SYNE3Q6ZMZ3 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
SYNE3Q6ZMZ3 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
SYNE3Q6ZMZ3 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SYNE3Q6ZMZ3 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC19.47■□□□□ 0.71
SYNE3Q6ZMZ3 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SYNE3Q6ZMZ3 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
SYNE3Q6ZMZ3 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
SYNE3Q6ZMZ3 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SYNE3Q6ZMZ3 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
SYNE3Q6ZMZ3 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
SYNE3Q6ZMZ3 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
SYNE3Q6ZMZ3 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
SYNE3Q6ZMZ3 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
SYNE3Q6ZMZ3 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SYNE3Q6ZMZ3 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
SYNE3Q6ZMZ3 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SYNE3Q6ZMZ3 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
SYNE3Q6ZMZ3 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SYNE3Q6ZMZ3 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC19.47■□□□□ 0.71
SYNE3Q6ZMZ3 FABP5-202ENST00000396359 986 ntTSL 5 BASIC19.47■□□□□ 0.71
SYNE3Q6ZMZ3 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC19.47■□□□□ 0.71
SYNE3Q6ZMZ3 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
SYNE3Q6ZMZ3 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
SYNE3Q6ZMZ3 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
SYNE3Q6ZMZ3 AC109635.5-201ENST00000533593 962 ntBASIC19.47■□□□□ 0.71
SYNE3Q6ZMZ3 COX5A-206ENST00000568783 571 ntTSL 3 BASIC19.47■□□□□ 0.71
SYNE3Q6ZMZ3 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
SYNE3Q6ZMZ3 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC19.47■□□□□ 0.71
SYNE3Q6ZMZ3 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC19.47■□□□□ 0.71
SYNE3Q6ZMZ3 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
SYNE3Q6ZMZ3 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC19.47■□□□□ 0.71
SYNE3Q6ZMZ3 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SYNE3Q6ZMZ3 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SYNE3Q6ZMZ3 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SYNE3Q6ZMZ3 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
SYNE3Q6ZMZ3 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC19.47■□□□□ 0.71
SYNE3Q6ZMZ3 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SYNE3Q6ZMZ3 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
SYNE3Q6ZMZ3 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC19.47■□□□□ 0.71
SYNE3Q6ZMZ3 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
SYNE3Q6ZMZ3 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC19.47■□□□□ 0.71
SYNE3Q6ZMZ3 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
SYNE3Q6ZMZ3 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
SYNE3Q6ZMZ3 WT1-209ENST00000530998 2421 ntTSL 2 BASIC19.46■□□□□ 0.71
SYNE3Q6ZMZ3 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC19.46■□□□□ 0.71
SYNE3Q6ZMZ3 GGT3P-204ENST00000453783 1664 ntBASIC19.46■□□□□ 0.71
SYNE3Q6ZMZ3 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
SYNE3Q6ZMZ3 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC19.46■□□□□ 0.71
SYNE3Q6ZMZ3 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SYNE3Q6ZMZ3 DPM2-202ENST00000373110 738 ntTSL 2 BASIC19.46■□□□□ 0.71
SYNE3Q6ZMZ3 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SYNE3Q6ZMZ3 IMP4-203ENST00000409935 958 ntTSL 5 BASIC19.46■□□□□ 0.71
SYNE3Q6ZMZ3 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
SYNE3Q6ZMZ3 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC19.46■□□□□ 0.71
SYNE3Q6ZMZ3 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC19.46■□□□□ 0.71
SYNE3Q6ZMZ3 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC19.46■□□□□ 0.71
SYNE3Q6ZMZ3 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
SYNE3Q6ZMZ3 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
SYNE3Q6ZMZ3 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SYNE3Q6ZMZ3 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SYNE3Q6ZMZ3 FLJ16779-201ENST00000612722 7638 ntBASIC19.46■□□□□ 0.71
SYNE3Q6ZMZ3 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC19.46■□□□□ 0.71
SYNE3Q6ZMZ3 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC19.46■□□□□ 0.71
SYNE3Q6ZMZ3 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SYNE3Q6ZMZ3 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC19.46■□□□□ 0.71
SYNE3Q6ZMZ3 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC19.46■□□□□ 0.71
SYNE3Q6ZMZ3 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SYNE3Q6ZMZ3 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC19.46■□□□□ 0.71
SYNE3Q6ZMZ3 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC19.46■□□□□ 0.71
SYNE3Q6ZMZ3 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC19.46■□□□□ 0.71
SYNE3Q6ZMZ3 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
SYNE3Q6ZMZ3 GGT4P-201ENST00000623672 1708 ntBASIC19.45■□□□□ 0.7
SYNE3Q6ZMZ3 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SYNE3Q6ZMZ3 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms