Protein–RNA interactions for Protein: Q68DV7

RNF43, E3 ubiquitin-protein ligase RNF43, humanhuman

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF43Q68DV7 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
RNF43Q68DV7 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC17.37■□□□□ 0.37
RNF43Q68DV7 AC092919.2-201ENST00000623631 1645 ntBASIC17.37■□□□□ 0.37
RNF43Q68DV7 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RNF43Q68DV7 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC17.37■□□□□ 0.37
RNF43Q68DV7 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RNF43Q68DV7 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RNF43Q68DV7 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
RNF43Q68DV7 AC140658.5-201ENST00000438532 169 ntBASIC17.37■□□□□ 0.37
RNF43Q68DV7 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC17.37■□□□□ 0.37
RNF43Q68DV7 AP000344.2-201ENST00000512987 629 ntBASIC17.37■□□□□ 0.37
RNF43Q68DV7 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RNF43Q68DV7 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
RNF43Q68DV7 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
RNF43Q68DV7 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RNF43Q68DV7 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RNF43Q68DV7 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC17.37■□□□□ 0.37
RNF43Q68DV7 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RNF43Q68DV7 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RNF43Q68DV7 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RNF43Q68DV7 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
RNF43Q68DV7 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC17.37■□□□□ 0.37
RNF43Q68DV7 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
RNF43Q68DV7 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RNF43Q68DV7 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RNF43Q68DV7 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC17.37■□□□□ 0.37
RNF43Q68DV7 AL353732.1-201ENST00000569618 1459 ntBASIC17.37■□□□□ 0.37
RNF43Q68DV7 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC17.37■□□□□ 0.37
RNF43Q68DV7 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC17.36■□□□□ 0.37
RNF43Q68DV7 STX3-203ENST00000529177 1571 ntTSL 2 BASIC17.36■□□□□ 0.37
RNF43Q68DV7 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC17.36■□□□□ 0.37
RNF43Q68DV7 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RNF43Q68DV7 SLC22A20-204ENST00000530038 1673 ntBASIC17.36■□□□□ 0.37
RNF43Q68DV7 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RNF43Q68DV7 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
RNF43Q68DV7 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC17.36■□□□□ 0.37
RNF43Q68DV7 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
RNF43Q68DV7 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC17.36■□□□□ 0.37
RNF43Q68DV7 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RNF43Q68DV7 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC17.36■□□□□ 0.37
RNF43Q68DV7 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
RNF43Q68DV7 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
RNF43Q68DV7 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RNF43Q68DV7 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
RNF43Q68DV7 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC17.36■□□□□ 0.37
RNF43Q68DV7 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC17.36■□□□□ 0.37
RNF43Q68DV7 PNKD-204ENST00000436005 978 ntTSL 5 BASIC17.36■□□□□ 0.37
RNF43Q68DV7 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC17.36■□□□□ 0.37
RNF43Q68DV7 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC17.36■□□□□ 0.37
RNF43Q68DV7 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC17.36■□□□□ 0.37
RNF43Q68DV7 RNF34-208ENST00000555076 593 ntTSL 3 BASIC17.36■□□□□ 0.37
RNF43Q68DV7 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC17.36■□□□□ 0.37
RNF43Q68DV7 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
RNF43Q68DV7 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC17.36■□□□□ 0.37
RNF43Q68DV7 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
RNF43Q68DV7 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC17.36■□□□□ 0.37
RNF43Q68DV7 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
RNF43Q68DV7 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC17.36■□□□□ 0.37
RNF43Q68DV7 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RNF43Q68DV7 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
RNF43Q68DV7 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
RNF43Q68DV7 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RNF43Q68DV7 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC17.36■□□□□ 0.37
RNF43Q68DV7 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RNF43Q68DV7 FOS-208ENST00000555686 1496 ntTSL 2 BASIC17.36■□□□□ 0.37
RNF43Q68DV7 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
RNF43Q68DV7 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC17.36■□□□□ 0.37
RNF43Q68DV7 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RNF43Q68DV7 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
RNF43Q68DV7 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
RNF43Q68DV7 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
RNF43Q68DV7 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
RNF43Q68DV7 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RNF43Q68DV7 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
RNF43Q68DV7 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
RNF43Q68DV7 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
RNF43Q68DV7 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC17.35■□□□□ 0.37
RNF43Q68DV7 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RNF43Q68DV7 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
RNF43Q68DV7 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
RNF43Q68DV7 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RNF43Q68DV7 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC17.35■□□□□ 0.37
RNF43Q68DV7 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
RNF43Q68DV7 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RNF43Q68DV7 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC17.35■□□□□ 0.37
RNF43Q68DV7 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
RNF43Q68DV7 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RNF43Q68DV7 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RNF43Q68DV7 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC17.35■□□□□ 0.37
RNF43Q68DV7 HMGA1P7-201ENST00000406908 502 ntBASIC17.35■□□□□ 0.37
RNF43Q68DV7 FAM58CP-201ENST00000435741 640 ntBASIC17.35■□□□□ 0.37
RNF43Q68DV7 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC17.35■□□□□ 0.37
RNF43Q68DV7 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC17.35■□□□□ 0.37
RNF43Q68DV7 PRR29-209ENST00000582540 967 ntTSL 2 BASIC17.35■□□□□ 0.37
RNF43Q68DV7 AC138761.1-201ENST00000584393 385 ntBASIC17.35■□□□□ 0.37
RNF43Q68DV7 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RNF43Q68DV7 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC17.35■□□□□ 0.37
RNF43Q68DV7 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RNF43Q68DV7 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RNF43Q68DV7 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC17.35■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms