Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
YBX1P67809 BANP-201ENST00000286122 2368 ntTSL 5 BASIC16.13■□□□□ 0.17
YBX1P67809 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
YBX1P67809 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
YBX1P67809 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
YBX1P67809 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
YBX1P67809 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
YBX1P67809 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC16.12■□□□□ 0.17
YBX1P67809 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
YBX1P67809 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
YBX1P67809 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC16.12■□□□□ 0.17
YBX1P67809 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC16.12■□□□□ 0.17
YBX1P67809 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC16.12■□□□□ 0.17
YBX1P67809 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
YBX1P67809 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
YBX1P67809 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
YBX1P67809 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
YBX1P67809 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
YBX1P67809 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
YBX1P67809 AC103702.1-201ENST00000548801 2630 ntBASIC16.12■□□□□ 0.17
YBX1P67809 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
YBX1P67809 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC16.12■□□□□ 0.17
YBX1P67809 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
YBX1P67809 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC16.12■□□□□ 0.17
YBX1P67809 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
YBX1P67809 HCG4-201ENST00000418983 998 ntBASIC16.12■□□□□ 0.17
YBX1P67809 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC16.12■□□□□ 0.17
YBX1P67809 AC004832.2-201ENST00000426397 482 ntBASIC16.12■□□□□ 0.17
YBX1P67809 COX10-202ENST00000429152 875 ntTSL 2 BASIC16.12■□□□□ 0.17
YBX1P67809 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
YBX1P67809 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
YBX1P67809 ALG1L5P-201ENST00000482043 771 ntBASIC16.12■□□□□ 0.17
YBX1P67809 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC16.12■□□□□ 0.17
YBX1P67809 CALM1-205ENST00000553542 877 ntTSL 5 BASIC16.12■□□□□ 0.17
YBX1P67809 AP002472.1-201ENST00000577490 586 ntBASIC16.12■□□□□ 0.17
YBX1P67809 CD7-202ENST00000578509 925 ntTSL 3 BASIC16.12■□□□□ 0.17
YBX1P67809 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC16.12■□□□□ 0.17
YBX1P67809 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC16.12■□□□□ 0.17
YBX1P67809 AC006538.3-201ENST00000612495 578 ntBASIC16.12■□□□□ 0.17
YBX1P67809 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC16.12■□□□□ 0.17
YBX1P67809 AL645728.2-201ENST00000641974 660 ntBASIC16.12■□□□□ 0.17
YBX1P67809 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
YBX1P67809 SLC9A3P2-201ENST00000447821 2021 ntBASIC16.12■□□□□ 0.17
YBX1P67809 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
YBX1P67809 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC16.12■□□□□ 0.17
YBX1P67809 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC16.12■□□□□ 0.17
YBX1P67809 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
YBX1P67809 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
YBX1P67809 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
YBX1P67809 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
YBX1P67809 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
YBX1P67809 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
YBX1P67809 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
YBX1P67809 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC16.11■□□□□ 0.17
YBX1P67809 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
YBX1P67809 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
YBX1P67809 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
YBX1P67809 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
YBX1P67809 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
YBX1P67809 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC16.11■□□□□ 0.17
YBX1P67809 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
YBX1P67809 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC16.11■□□□□ 0.17
YBX1P67809 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
YBX1P67809 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC16.11■□□□□ 0.17
YBX1P67809 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
YBX1P67809 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
YBX1P67809 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
YBX1P67809 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
YBX1P67809 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
YBX1P67809 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
YBX1P67809 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
YBX1P67809 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC16.11■□□□□ 0.17
YBX1P67809 RNU1-129P-201ENST00000384064 167 ntBASIC16.11■□□□□ 0.17
YBX1P67809 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC16.11■□□□□ 0.17
YBX1P67809 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC16.11■□□□□ 0.17
YBX1P67809 MCCD1P2-201ENST00000423228 335 ntBASIC16.11■□□□□ 0.17
YBX1P67809 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
YBX1P67809 FIS1-203ENST00000442303 631 ntTSL 3 BASIC16.11■□□□□ 0.17
YBX1P67809 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC16.11■□□□□ 0.17
YBX1P67809 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC16.11■□□□□ 0.17
YBX1P67809 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
YBX1P67809 AC002347.1-201ENST00000569543 541 ntBASIC16.11■□□□□ 0.17
YBX1P67809 U1.21-201ENST00000580816 167 ntBASIC16.11■□□□□ 0.17
YBX1P67809 AC010327.4-202ENST00000591484 748 ntBASIC16.11■□□□□ 0.17
YBX1P67809 AL078644.1-201ENST00000609881 752 ntBASIC16.11■□□□□ 0.17
YBX1P67809 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
YBX1P67809 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC16.11■□□□□ 0.17
YBX1P67809 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC16.11■□□□□ 0.17
YBX1P67809 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC16.11■□□□□ 0.17
YBX1P67809 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
YBX1P67809 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
YBX1P67809 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
YBX1P67809 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
YBX1P67809 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC16.11■□□□□ 0.17
YBX1P67809 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
YBX1P67809 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
YBX1P67809 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
YBX1P67809 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
YBX1P67809 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
YBX1P67809 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 87.7 ms