Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CLRN1P58418 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC14.81□□□□□ -0.04
CLRN1P58418 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC14.81□□□□□ -0.04
CLRN1P58418 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CLRN1P58418 AL645728.2-201ENST00000641974 660 ntBASIC14.81□□□□□ -0.04
CLRN1P58418 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
CLRN1P58418 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
CLRN1P58418 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CLRN1P58418 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC14.81□□□□□ -0.04
CLRN1P58418 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
CLRN1P58418 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
CLRN1P58418 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CLRN1P58418 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC14.81□□□□□ -0.04
CLRN1P58418 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
CLRN1P58418 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CLRN1P58418 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CLRN1P58418 AC104109.2-201ENST00000602919 1418 ntBASIC14.81□□□□□ -0.04
CLRN1P58418 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CLRN1P58418 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC14.81□□□□□ -0.04
CLRN1P58418 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC14.81□□□□□ -0.04
CLRN1P58418 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC14.81□□□□□ -0.04
CLRN1P58418 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CLRN1P58418 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
CLRN1P58418 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
CLRN1P58418 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CLRN1P58418 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
CLRN1P58418 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CLRN1P58418 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CLRN1P58418 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CLRN1P58418 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
CLRN1P58418 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC14.8□□□□□ -0.04
CLRN1P58418 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC14.8□□□□□ -0.04
CLRN1P58418 ME2P1-201ENST00000426028 1970 ntBASIC14.8□□□□□ -0.04
CLRN1P58418 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
CLRN1P58418 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
CLRN1P58418 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
CLRN1P58418 AC006449.5-201ENST00000610658 2098 ntBASIC14.8□□□□□ -0.04
CLRN1P58418 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CLRN1P58418 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CLRN1P58418 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CLRN1P58418 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CLRN1P58418 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
CLRN1P58418 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC14.8□□□□□ -0.04
CLRN1P58418 AL031432.2-201ENST00000566714 459 ntBASIC14.8□□□□□ -0.04
CLRN1P58418 AL928711.1-201ENST00000570165 459 ntBASIC14.8□□□□□ -0.04
CLRN1P58418 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC14.8□□□□□ -0.04
CLRN1P58418 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC14.8□□□□□ -0.04
CLRN1P58418 RPS15-207ENST00000591032 550 ntTSL 3 BASIC14.8□□□□□ -0.04
CLRN1P58418 RPS15-212ENST00000593052 629 ntTSL 2 BASIC14.8□□□□□ -0.04
CLRN1P58418 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC14.8□□□□□ -0.04
CLRN1P58418 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC14.8□□□□□ -0.04
CLRN1P58418 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CLRN1P58418 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
CLRN1P58418 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC14.8□□□□□ -0.04
CLRN1P58418 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CLRN1P58418 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CLRN1P58418 GGT4P-201ENST00000623672 1708 ntBASIC14.8□□□□□ -0.04
CLRN1P58418 HARS-203ENST00000431330 1774 ntTSL 2 BASIC14.8□□□□□ -0.04
CLRN1P58418 GPAA1P2-202ENST00000606848 1787 ntBASIC14.8□□□□□ -0.04
CLRN1P58418 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CLRN1P58418 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
CLRN1P58418 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
CLRN1P58418 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CLRN1P58418 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
CLRN1P58418 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC14.8□□□□□ -0.04
CLRN1P58418 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC14.8□□□□□ -0.04
CLRN1P58418 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CLRN1P58418 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CLRN1P58418 AC005052.1-201ENST00000625181 2492 ntBASIC14.8□□□□□ -0.04
CLRN1P58418 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CLRN1P58418 AC092364.2-201ENST00000596710 2692 ntBASIC14.79□□□□□ -0.04
CLRN1P58418 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CLRN1P58418 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CLRN1P58418 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC14.79□□□□□ -0.04
CLRN1P58418 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC14.79□□□□□ -0.04
CLRN1P58418 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CLRN1P58418 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CLRN1P58418 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
CLRN1P58418 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC14.79□□□□□ -0.04
CLRN1P58418 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC14.79□□□□□ -0.04
CLRN1P58418 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
CLRN1P58418 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC14.79□□□□□ -0.04
CLRN1P58418 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
CLRN1P58418 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
CLRN1P58418 HCG4B-203ENST00000450128 991 ntBASIC14.79□□□□□ -0.04
CLRN1P58418 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CLRN1P58418 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
CLRN1P58418 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CLRN1P58418 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CLRN1P58418 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC14.79□□□□□ -0.04
CLRN1P58418 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CLRN1P58418 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CLRN1P58418 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CLRN1P58418 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC14.79□□□□□ -0.04
CLRN1P58418 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC14.79□□□□□ -0.04
CLRN1P58418 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC14.79□□□□□ -0.04
CLRN1P58418 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC14.79□□□□□ -0.04
CLRN1P58418 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC14.79□□□□□ -0.04
CLRN1P58418 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC14.79□□□□□ -0.04
CLRN1P58418 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms