Protein–RNA interactions for Protein: P56159

GFRA1, GDNF family receptor alpha-1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GFRA1P56159 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
GFRA1P56159 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC14.77□□□□□ -0.04
GFRA1P56159 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
GFRA1P56159 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
GFRA1P56159 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
GFRA1P56159 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC14.77□□□□□ -0.04
GFRA1P56159 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
GFRA1P56159 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
GFRA1P56159 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
GFRA1P56159 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC14.77□□□□□ -0.05
GFRA1P56159 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
GFRA1P56159 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
GFRA1P56159 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
GFRA1P56159 HLA-DRB6-201ENST00000411500 1235 ntBASIC14.77□□□□□ -0.05
GFRA1P56159 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC14.77□□□□□ -0.05
GFRA1P56159 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
GFRA1P56159 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC14.77□□□□□ -0.05
GFRA1P56159 KLF2P3-201ENST00000451977 1087 ntBASIC14.77□□□□□ -0.05
GFRA1P56159 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC14.77□□□□□ -0.05
GFRA1P56159 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC14.77□□□□□ -0.05
GFRA1P56159 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC14.77□□□□□ -0.05
GFRA1P56159 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC14.77□□□□□ -0.05
GFRA1P56159 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC14.77□□□□□ -0.05
GFRA1P56159 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
GFRA1P56159 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC14.77□□□□□ -0.05
GFRA1P56159 MIR6080-201ENST00000617359 66 ntBASIC14.77□□□□□ -0.05
GFRA1P56159 AC093512.1-201ENST00000617969 520 ntBASIC14.77□□□□□ -0.05
GFRA1P56159 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
GFRA1P56159 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
GFRA1P56159 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC14.77□□□□□ -0.05
GFRA1P56159 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC14.77□□□□□ -0.05
GFRA1P56159 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
GFRA1P56159 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
GFRA1P56159 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
GFRA1P56159 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
GFRA1P56159 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC14.77□□□□□ -0.05
GFRA1P56159 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC14.77□□□□□ -0.05
GFRA1P56159 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
GFRA1P56159 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.05
GFRA1P56159 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
GFRA1P56159 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
GFRA1P56159 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
GFRA1P56159 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
GFRA1P56159 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC14.77□□□□□ -0.05
GFRA1P56159 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
GFRA1P56159 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC14.77□□□□□ -0.05
GFRA1P56159 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
GFRA1P56159 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC14.76□□□□□ -0.05
GFRA1P56159 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
GFRA1P56159 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
GFRA1P56159 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
GFRA1P56159 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
GFRA1P56159 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
GFRA1P56159 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
GFRA1P56159 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC14.76□□□□□ -0.05
GFRA1P56159 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
GFRA1P56159 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC14.76□□□□□ -0.05
GFRA1P56159 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
GFRA1P56159 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
GFRA1P56159 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
GFRA1P56159 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
GFRA1P56159 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
GFRA1P56159 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
GFRA1P56159 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
GFRA1P56159 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
GFRA1P56159 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
GFRA1P56159 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC14.76□□□□□ -0.05
GFRA1P56159 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC14.76□□□□□ -0.05
GFRA1P56159 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
GFRA1P56159 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
GFRA1P56159 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC14.76□□□□□ -0.05
GFRA1P56159 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
GFRA1P56159 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
GFRA1P56159 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC14.76□□□□□ -0.05
GFRA1P56159 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
GFRA1P56159 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC14.76□□□□□ -0.05
GFRA1P56159 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC14.76□□□□□ -0.05
GFRA1P56159 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC14.76□□□□□ -0.05
GFRA1P56159 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
GFRA1P56159 AC011676.5-201ENST00000624864 2660 ntBASIC14.76□□□□□ -0.05
GFRA1P56159 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
GFRA1P56159 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
GFRA1P56159 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC14.76□□□□□ -0.05
GFRA1P56159 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC14.76□□□□□ -0.05
GFRA1P56159 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC14.76□□□□□ -0.05
GFRA1P56159 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC14.75□□□□□ -0.05
GFRA1P56159 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC14.75□□□□□ -0.05
GFRA1P56159 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
GFRA1P56159 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
GFRA1P56159 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
GFRA1P56159 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC14.75□□□□□ -0.05
GFRA1P56159 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC14.75□□□□□ -0.05
GFRA1P56159 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
GFRA1P56159 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
GFRA1P56159 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC14.75□□□□□ -0.05
GFRA1P56159 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
GFRA1P56159 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC14.75□□□□□ -0.05
GFRA1P56159 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
GFRA1P56159 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
GFRA1P56159 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms