Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PKNOX1P55347 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC16.28■□□□□ 0.2
PKNOX1P55347 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
PKNOX1P55347 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC16.28■□□□□ 0.2
PKNOX1P55347 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC16.28■□□□□ 0.2
PKNOX1P55347 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC16.28■□□□□ 0.2
PKNOX1P55347 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PKNOX1P55347 PTCHD3P3-201ENST00000403073 906 ntBASIC16.28■□□□□ 0.2
PKNOX1P55347 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PKNOX1P55347 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC16.28■□□□□ 0.2
PKNOX1P55347 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC16.28■□□□□ 0.2
PKNOX1P55347 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC16.28■□□□□ 0.2
PKNOX1P55347 AC091304.2-201ENST00000564639 760 ntBASIC16.28■□□□□ 0.2
PKNOX1P55347 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC16.28■□□□□ 0.2
PKNOX1P55347 SDCCAG3P1-201ENST00000589292 1150 ntBASIC16.28■□□□□ 0.2
PKNOX1P55347 SIGLEC29P-201ENST00000599873 1114 ntBASIC16.28■□□□□ 0.2
PKNOX1P55347 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC16.28■□□□□ 0.2
PKNOX1P55347 REXO1L6P-202ENST00000619970 1078 ntBASIC16.28■□□□□ 0.2
PKNOX1P55347 AL805961.1-202ENST00000641562 540 ntBASIC16.28■□□□□ 0.2
PKNOX1P55347 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC16.28■□□□□ 0.2
PKNOX1P55347 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PKNOX1P55347 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PKNOX1P55347 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
PKNOX1P55347 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC16.28■□□□□ 0.2
PKNOX1P55347 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PKNOX1P55347 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
PKNOX1P55347 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PKNOX1P55347 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PKNOX1P55347 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC16.28■□□□□ 0.2
PKNOX1P55347 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
PKNOX1P55347 PI4KAP1-204ENST00000612579 1703 ntBASIC16.28■□□□□ 0.2
PKNOX1P55347 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
PKNOX1P55347 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
PKNOX1P55347 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
PKNOX1P55347 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
PKNOX1P55347 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC16.27■□□□□ 0.2
PKNOX1P55347 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PKNOX1P55347 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PKNOX1P55347 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
PKNOX1P55347 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
PKNOX1P55347 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PKNOX1P55347 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
PKNOX1P55347 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PKNOX1P55347 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PKNOX1P55347 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
PKNOX1P55347 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PKNOX1P55347 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
PKNOX1P55347 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
PKNOX1P55347 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
PKNOX1P55347 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC16.27■□□□□ 0.2
PKNOX1P55347 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
PKNOX1P55347 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
PKNOX1P55347 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PKNOX1P55347 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC16.27■□□□□ 0.2
PKNOX1P55347 HCG4P8-203ENST00000443049 980 ntBASIC16.27■□□□□ 0.2
PKNOX1P55347 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC16.27■□□□□ 0.2
PKNOX1P55347 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
PKNOX1P55347 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC16.27■□□□□ 0.2
PKNOX1P55347 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PKNOX1P55347 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
PKNOX1P55347 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PKNOX1P55347 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PKNOX1P55347 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
PKNOX1P55347 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
PKNOX1P55347 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
PKNOX1P55347 AL512652.2-201ENST00000625156 1716 ntBASIC16.27■□□□□ 0.19
PKNOX1P55347 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
PKNOX1P55347 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
PKNOX1P55347 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
PKNOX1P55347 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
PKNOX1P55347 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
PKNOX1P55347 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC16.27■□□□□ 0.19
PKNOX1P55347 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
PKNOX1P55347 VILL-207ENST00000465644 1857 ntTSL 5 BASIC16.27■□□□□ 0.19
PKNOX1P55347 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC16.27■□□□□ 0.19
PKNOX1P55347 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
PKNOX1P55347 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PKNOX1P55347 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PKNOX1P55347 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
PKNOX1P55347 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC16.26■□□□□ 0.19
PKNOX1P55347 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC16.26■□□□□ 0.19
PKNOX1P55347 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
PKNOX1P55347 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC16.26■□□□□ 0.19
PKNOX1P55347 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC16.26■□□□□ 0.19
PKNOX1P55347 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PKNOX1P55347 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PKNOX1P55347 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
PKNOX1P55347 AC131009.4-201ENST00000624048 1740 ntBASIC16.26■□□□□ 0.19
PKNOX1P55347 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC16.26■□□□□ 0.19
PKNOX1P55347 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
PKNOX1P55347 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PKNOX1P55347 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PKNOX1P55347 DFFB-203ENST00000341385 572 ntTSL 5 BASIC16.26■□□□□ 0.19
PKNOX1P55347 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC16.26■□□□□ 0.19
PKNOX1P55347 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC16.26■□□□□ 0.19
PKNOX1P55347 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
PKNOX1P55347 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC16.26■□□□□ 0.19
PKNOX1P55347 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC16.26■□□□□ 0.19
PKNOX1P55347 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PKNOX1P55347 IRF8-202ENST00000562492 946 ntTSL 3 BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 60.6 ms