Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC17.23■□□□□ 0.35
CDH6P55285 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
CDH6P55285 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC17.23■□□□□ 0.35
CDH6P55285 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC17.23■□□□□ 0.35
CDH6P55285 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CDH6P55285 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
CDH6P55285 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC17.23■□□□□ 0.35
CDH6P55285 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC17.23■□□□□ 0.35
CDH6P55285 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC17.23■□□□□ 0.35
CDH6P55285 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC17.23■□□□□ 0.35
CDH6P55285 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CDH6P55285 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC17.23■□□□□ 0.35
CDH6P55285 RPL13AP23-201ENST00000480739 586 ntBASIC17.23■□□□□ 0.35
CDH6P55285 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC17.23■□□□□ 0.35
CDH6P55285 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
CDH6P55285 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC17.23■□□□□ 0.35
CDH6P55285 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC17.23■□□□□ 0.35
CDH6P55285 AC034105.1-201ENST00000563488 319 ntBASIC17.23■□□□□ 0.35
CDH6P55285 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC17.23■□□□□ 0.35
CDH6P55285 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC17.23■□□□□ 0.35
CDH6P55285 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
CDH6P55285 AL031055.1-201ENST00000606362 631 ntBASIC17.23■□□□□ 0.35
CDH6P55285 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC17.23■□□□□ 0.35
CDH6P55285 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CDH6P55285 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
CDH6P55285 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CDH6P55285 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
CDH6P55285 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
CDH6P55285 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
CDH6P55285 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC17.23■□□□□ 0.35
CDH6P55285 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC17.23■□□□□ 0.35
CDH6P55285 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC17.23■□□□□ 0.35
CDH6P55285 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC17.23■□□□□ 0.35
CDH6P55285 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CDH6P55285 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CDH6P55285 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CDH6P55285 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CDH6P55285 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC17.22■□□□□ 0.35
CDH6P55285 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
CDH6P55285 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CDH6P55285 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC17.22■□□□□ 0.35
CDH6P55285 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
CDH6P55285 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
CDH6P55285 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC17.22■□□□□ 0.35
CDH6P55285 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CDH6P55285 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CDH6P55285 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
CDH6P55285 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CDH6P55285 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC17.22■□□□□ 0.35
CDH6P55285 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC17.22■□□□□ 0.35
CDH6P55285 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CDH6P55285 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
CDH6P55285 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CDH6P55285 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CDH6P55285 DDT-204ENST00000404092 805 ntTSL 3 BASIC17.22■□□□□ 0.35
CDH6P55285 RHOQP3-201ENST00000437982 621 ntBASIC17.22■□□□□ 0.35
CDH6P55285 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CDH6P55285 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
CDH6P55285 AC020765.3-201ENST00000613051 740 ntBASIC17.22■□□□□ 0.35
CDH6P55285 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CDH6P55285 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC17.22■□□□□ 0.35
CDH6P55285 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CDH6P55285 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CDH6P55285 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC17.22■□□□□ 0.35
CDH6P55285 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CDH6P55285 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CDH6P55285 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC17.22■□□□□ 0.35
CDH6P55285 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CDH6P55285 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC17.22■□□□□ 0.35
CDH6P55285 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CDH6P55285 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CDH6P55285 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC17.22■□□□□ 0.35
CDH6P55285 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CDH6P55285 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CDH6P55285 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CDH6P55285 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CDH6P55285 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CDH6P55285 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CDH6P55285 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
CDH6P55285 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CDH6P55285 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CDH6P55285 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CDH6P55285 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.35
CDH6P55285 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CDH6P55285 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC17.21■□□□□ 0.35
CDH6P55285 MTHFR-217ENST00000641820 1569 ntBASIC17.21■□□□□ 0.35
CDH6P55285 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC17.21■□□□□ 0.35
CDH6P55285 DPM2-202ENST00000373110 738 ntTSL 2 BASIC17.21■□□□□ 0.35
CDH6P55285 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
CDH6P55285 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
CDH6P55285 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC17.21■□□□□ 0.35
CDH6P55285 CRCP-205ENST00000431089 942 ntTSL 2 BASIC17.21■□□□□ 0.35
CDH6P55285 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CDH6P55285 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CDH6P55285 RPL18-209ENST00000550645 463 ntTSL 5 BASIC17.21■□□□□ 0.35
CDH6P55285 RPL18-214ENST00000552588 559 ntTSL 3 BASIC17.21■□□□□ 0.35
CDH6P55285 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC17.21■□□□□ 0.35
CDH6P55285 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CDH6P55285 RPL28-209ENST00000560055 670 ntTSL 3 BASIC17.21■□□□□ 0.35
CDH6P55285 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms