Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
MRE11P49959 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC19.34■□□□□ 0.69
MRE11P49959 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC19.34■□□□□ 0.69
MRE11P49959 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
MRE11P49959 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC19.34■□□□□ 0.69
MRE11P49959 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
MRE11P49959 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC19.34■□□□□ 0.69
MRE11P49959 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
MRE11P49959 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC19.34■□□□□ 0.69
MRE11P49959 AC063926.3-201ENST00000624734 5658 ntBASIC19.34■□□□□ 0.69
MRE11P49959 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
MRE11P49959 TUBB8P12-201ENST00000308911 1335 ntBASIC19.34■□□□□ 0.69
MRE11P49959 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
MRE11P49959 TUBB7P-202ENST00000428444 1305 ntBASIC19.34■□□□□ 0.69
MRE11P49959 TUBB8P7-204ENST00000567960 1332 ntBASIC19.34■□□□□ 0.69
MRE11P49959 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
MRE11P49959 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
MRE11P49959 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC19.34■□□□□ 0.69
MRE11P49959 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
MRE11P49959 GRAMD4P1-201ENST00000435181 1110 ntBASIC19.34■□□□□ 0.69
MRE11P49959 KRT16P4-201ENST00000453883 522 ntBASIC19.34■□□□□ 0.69
MRE11P49959 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
MRE11P49959 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
MRE11P49959 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC19.34■□□□□ 0.69
MRE11P49959 GCSHP2-201ENST00000560971 527 ntBASIC19.34■□□□□ 0.69
MRE11P49959 AC012615.1-201ENST00000565797 1299 ntBASIC19.34■□□□□ 0.69
MRE11P49959 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
MRE11P49959 AP001005.1-201ENST00000571755 1248 ntBASIC19.34■□□□□ 0.69
MRE11P49959 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
MRE11P49959 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC19.34■□□□□ 0.69
MRE11P49959 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
MRE11P49959 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
MRE11P49959 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
MRE11P49959 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
MRE11P49959 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
MRE11P49959 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
MRE11P49959 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
MRE11P49959 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
MRE11P49959 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
MRE11P49959 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
MRE11P49959 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC19.34■□□□□ 0.69
MRE11P49959 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
MRE11P49959 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
MRE11P49959 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
MRE11P49959 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC19.34■□□□□ 0.69
MRE11P49959 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
MRE11P49959 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
MRE11P49959 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
MRE11P49959 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
MRE11P49959 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
MRE11P49959 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
MRE11P49959 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC19.33■□□□□ 0.69
MRE11P49959 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
MRE11P49959 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
MRE11P49959 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
MRE11P49959 HBZP1-201ENST00000354915 429 ntBASIC19.33■□□□□ 0.68
MRE11P49959 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC19.33■□□□□ 0.68
MRE11P49959 TLE1-202ENST00000376484 666 ntTSL 3 BASIC19.33■□□□□ 0.68
MRE11P49959 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
MRE11P49959 SRP19-202ENST00000445150 833 ntTSL 2 BASIC19.33■□□□□ 0.68
MRE11P49959 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC19.33■□□□□ 0.68
MRE11P49959 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC19.33■□□□□ 0.68
MRE11P49959 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC19.33■□□□□ 0.68
MRE11P49959 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC19.33■□□□□ 0.68
MRE11P49959 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
MRE11P49959 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
MRE11P49959 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
MRE11P49959 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
MRE11P49959 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
MRE11P49959 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
MRE11P49959 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
MRE11P49959 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
MRE11P49959 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC19.33■□□□□ 0.68
MRE11P49959 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC19.33■□□□□ 0.68
MRE11P49959 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC19.33■□□□□ 0.68
MRE11P49959 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
MRE11P49959 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
MRE11P49959 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
MRE11P49959 WARS-232ENST00000556645 2508 ntTSL 5 BASIC19.32■□□□□ 0.68
MRE11P49959 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
MRE11P49959 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
MRE11P49959 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
MRE11P49959 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
MRE11P49959 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
MRE11P49959 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC19.32■□□□□ 0.68
MRE11P49959 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC19.32■□□□□ 0.68
MRE11P49959 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC19.32■□□□□ 0.68
MRE11P49959 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
MRE11P49959 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
MRE11P49959 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
MRE11P49959 MYCLP1-201ENST00000372451 1075 ntBASIC19.32■□□□□ 0.68
MRE11P49959 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC19.32■□□□□ 0.68
MRE11P49959 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
MRE11P49959 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC19.32■□□□□ 0.68
MRE11P49959 MIR940-201ENST00000401276 94 ntBASIC19.32■□□□□ 0.68
MRE11P49959 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
MRE11P49959 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC19.32■□□□□ 0.68
MRE11P49959 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC19.32■□□□□ 0.68
MRE11P49959 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
MRE11P49959 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms