Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SMARCA1P28370 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SMARCA1P28370 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SMARCA1P28370 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SMARCA1P28370 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SMARCA1P28370 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC18.88■□□□□ 0.61
SMARCA1P28370 AL645939.2-201ENST00000427340 991 ntBASIC18.88■□□□□ 0.61
SMARCA1P28370 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC18.88■□□□□ 0.61
SMARCA1P28370 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SMARCA1P28370 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC18.88■□□□□ 0.61
SMARCA1P28370 RPL28-205ENST00000558131 444 ntTSL 5 BASIC18.88■□□□□ 0.61
SMARCA1P28370 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC18.88■□□□□ 0.61
SMARCA1P28370 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC18.88■□□□□ 0.61
SMARCA1P28370 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
SMARCA1P28370 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
SMARCA1P28370 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
SMARCA1P28370 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SMARCA1P28370 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SMARCA1P28370 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC18.88■□□□□ 0.61
SMARCA1P28370 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
SMARCA1P28370 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
SMARCA1P28370 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
SMARCA1P28370 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SMARCA1P28370 REXO1L8P-201ENST00000604378 1897 ntBASIC18.88■□□□□ 0.61
SMARCA1P28370 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
SMARCA1P28370 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
SMARCA1P28370 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC18.87■□□□□ 0.61
SMARCA1P28370 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
SMARCA1P28370 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SMARCA1P28370 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SMARCA1P28370 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
SMARCA1P28370 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SMARCA1P28370 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SMARCA1P28370 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SMARCA1P28370 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC18.87■□□□□ 0.61
SMARCA1P28370 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC18.87■□□□□ 0.61
SMARCA1P28370 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC18.87■□□□□ 0.61
SMARCA1P28370 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
SMARCA1P28370 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC18.87■□□□□ 0.61
SMARCA1P28370 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
SMARCA1P28370 MAX-210ENST00000555419 765 ntTSL 5 BASIC18.87■□□□□ 0.61
SMARCA1P28370 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC18.87■□□□□ 0.61
SMARCA1P28370 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
SMARCA1P28370 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC18.87■□□□□ 0.61
SMARCA1P28370 COQ4-205ENST00000609948 956 ntTSL 2 BASIC18.87■□□□□ 0.61
SMARCA1P28370 AC007967.4-201ENST00000614700 386 ntBASIC18.87■□□□□ 0.61
SMARCA1P28370 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SMARCA1P28370 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
SMARCA1P28370 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC18.87■□□□□ 0.61
SMARCA1P28370 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC18.86■□□□□ 0.61
SMARCA1P28370 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC18.86■□□□□ 0.61
SMARCA1P28370 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SMARCA1P28370 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC18.86■□□□□ 0.61
SMARCA1P28370 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
SMARCA1P28370 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
SMARCA1P28370 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SMARCA1P28370 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC18.86■□□□□ 0.61
SMARCA1P28370 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SMARCA1P28370 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
SMARCA1P28370 AC008677.1-201ENST00000519230 1561 ntBASIC18.86■□□□□ 0.61
SMARCA1P28370 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC18.86■□□□□ 0.61
SMARCA1P28370 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SMARCA1P28370 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
SMARCA1P28370 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
SMARCA1P28370 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
SMARCA1P28370 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
SMARCA1P28370 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SMARCA1P28370 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SMARCA1P28370 CNN2P2-201ENST00000443536 909 ntBASIC18.86■□□□□ 0.61
SMARCA1P28370 CNN2P3-201ENST00000450201 906 ntBASIC18.86■□□□□ 0.61
SMARCA1P28370 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC18.86■□□□□ 0.61
SMARCA1P28370 AC067863.1-201ENST00000494933 530 ntBASIC18.86■□□□□ 0.61
SMARCA1P28370 RNA5SP410-201ENST00000516285 106 ntBASIC18.86■□□□□ 0.61
SMARCA1P28370 VPS29-207ENST00000549970 818 ntTSL 3 BASIC18.86■□□□□ 0.61
SMARCA1P28370 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC18.86■□□□□ 0.61
SMARCA1P28370 AC051619.7-201ENST00000568314 623 ntBASIC18.86■□□□□ 0.61
SMARCA1P28370 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SMARCA1P28370 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC18.86■□□□□ 0.61
SMARCA1P28370 AL136317.3-201ENST00000618497 906 ntBASIC18.86■□□□□ 0.61
SMARCA1P28370 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
SMARCA1P28370 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SMARCA1P28370 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC18.86■□□□□ 0.61
SMARCA1P28370 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
SMARCA1P28370 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC18.86■□□□□ 0.61
SMARCA1P28370 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC18.86■□□□□ 0.61
SMARCA1P28370 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
SMARCA1P28370 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SMARCA1P28370 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SMARCA1P28370 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC18.86■□□□□ 0.61
SMARCA1P28370 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
SMARCA1P28370 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC18.85■□□□□ 0.61
SMARCA1P28370 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SMARCA1P28370 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC18.85■□□□□ 0.61
SMARCA1P28370 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SMARCA1P28370 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SMARCA1P28370 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SMARCA1P28370 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC18.85■□□□□ 0.61
SMARCA1P28370 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC18.85■□□□□ 0.61
SMARCA1P28370 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
SMARCA1P28370 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms