Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL6A3P12111 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL6A3P12111 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC16.88■□□□□ 0.29
COL6A3P12111 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL6A3P12111 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC16.88■□□□□ 0.29
COL6A3P12111 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
COL6A3P12111 AL136982.4-201ENST00000437689 1740 ntBASIC16.88■□□□□ 0.29
COL6A3P12111 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL6A3P12111 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL6A3P12111 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL6A3P12111 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL6A3P12111 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL6A3P12111 AC026316.1-201ENST00000398900 414 ntBASIC16.88■□□□□ 0.29
COL6A3P12111 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC16.88■□□□□ 0.29
COL6A3P12111 C2orf27AP3-201ENST00000434123 579 ntBASIC16.88■□□□□ 0.29
COL6A3P12111 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC16.88■□□□□ 0.29
COL6A3P12111 RN7SL774P-201ENST00000577467 290 ntBASIC16.88■□□□□ 0.29
COL6A3P12111 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC16.88■□□□□ 0.29
COL6A3P12111 AL354718.3-201ENST00000616414 581 ntBASIC16.88■□□□□ 0.29
COL6A3P12111 CR382287.1-201ENST00000623954 586 ntBASIC16.88■□□□□ 0.29
COL6A3P12111 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL6A3P12111 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL6A3P12111 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL6A3P12111 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC16.88■□□□□ 0.29
COL6A3P12111 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC16.88■□□□□ 0.29
COL6A3P12111 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
COL6A3P12111 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL6A3P12111 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL6A3P12111 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL6A3P12111 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
COL6A3P12111 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL6A3P12111 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
COL6A3P12111 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL6A3P12111 AL157792.1-201ENST00000488281 530 ntBASIC16.88■□□□□ 0.29
COL6A3P12111 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
COL6A3P12111 AL589702.1-201ENST00000641229 1509 ntBASIC16.88■□□□□ 0.29
COL6A3P12111 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC16.88■□□□□ 0.29
COL6A3P12111 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL6A3P12111 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
COL6A3P12111 ACTG1P2-201ENST00000415776 1125 ntBASIC16.87■□□□□ 0.29
COL6A3P12111 ACTG1P11-201ENST00000425411 1125 ntBASIC16.87■□□□□ 0.29
COL6A3P12111 HIST3H2BA-201ENST00000436555 524 ntBASIC16.87■□□□□ 0.29
COL6A3P12111 ACR-203ENST00000529621 708 ntTSL 5 BASIC16.87■□□□□ 0.29
COL6A3P12111 PTGR1-209ENST00000538962 1200 ntTSL 2 BASIC16.87■□□□□ 0.29
COL6A3P12111 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
COL6A3P12111 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL6A3P12111 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL6A3P12111 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
COL6A3P12111 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL6A3P12111 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL6A3P12111 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
COL6A3P12111 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
COL6A3P12111 AC098935.1-201ENST00000446057 611 ntBASIC16.87■□□□□ 0.29
COL6A3P12111 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC16.87■□□□□ 0.29
COL6A3P12111 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
COL6A3P12111 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL6A3P12111 AC104581.1-202ENST00000635932 2618 ntBASIC16.87■□□□□ 0.29
COL6A3P12111 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
COL6A3P12111 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC16.87■□□□□ 0.29
COL6A3P12111 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC16.87■□□□□ 0.29
COL6A3P12111 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
COL6A3P12111 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
COL6A3P12111 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC16.87■□□□□ 0.29
COL6A3P12111 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL6A3P12111 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
COL6A3P12111 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC16.87■□□□□ 0.29
COL6A3P12111 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
COL6A3P12111 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC16.87■□□□□ 0.29
COL6A3P12111 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL6A3P12111 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
COL6A3P12111 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL6A3P12111 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC16.86■□□□□ 0.29
COL6A3P12111 AC012317.2-201ENST00000623305 2251 ntBASIC16.86■□□□□ 0.29
COL6A3P12111 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL6A3P12111 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC16.86■□□□□ 0.29
COL6A3P12111 TNFSF11-201ENST00000239849 911 ntTSL 5 BASIC16.86■□□□□ 0.29
COL6A3P12111 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC16.86■□□□□ 0.29
COL6A3P12111 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL6A3P12111 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
COL6A3P12111 AL109767.1-201ENST00000429450 564 ntTSL 4 BASIC16.86■□□□□ 0.29
COL6A3P12111 ITGA9-AS1-205ENST00000438136 578 ntTSL 4 BASIC16.86■□□□□ 0.29
COL6A3P12111 SERPINA13P-202ENST00000478994 924 ntBASIC16.86■□□□□ 0.29
COL6A3P12111 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
COL6A3P12111 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
COL6A3P12111 FAM192A-218ENST00000567439 1086 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
COL6A3P12111 CENPX-208ENST00000584347 799 ntTSL 2 BASIC16.86■□□□□ 0.29
COL6A3P12111 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC16.86■□□□□ 0.29
COL6A3P12111 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL6A3P12111 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL6A3P12111 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL6A3P12111 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL6A3P12111 LINC01278-201ENST00000433061 529 ntTSL 3 BASIC16.86■□□□□ 0.29
COL6A3P12111 PLIN5-202ENST00000586133 907 ntTSL 3 BASIC16.86■□□□□ 0.29
COL6A3P12111 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
COL6A3P12111 AC093567.1-201ENST00000590649 877 ntTSL 3 BASIC16.86■□□□□ 0.29
COL6A3P12111 LINC01278-206ENST00000610088 554 ntTSL 4 BASIC16.86■□□□□ 0.29
COL6A3P12111 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC16.86■□□□□ 0.29
COL6A3P12111 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL6A3P12111 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL6A3P12111 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 60.5 ms