Protein–RNA interactions for Protein: O43679

LDB2, LIM domain-binding protein 2, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB2O43679 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC16.52■□□□□ 0.24
LDB2O43679 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
LDB2O43679 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
LDB2O43679 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC16.52■□□□□ 0.24
LDB2O43679 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
LDB2O43679 PMS2P7-201ENST00000506558 1336 ntBASIC16.52■□□□□ 0.24
LDB2O43679 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
LDB2O43679 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC16.52■□□□□ 0.24
LDB2O43679 AC006449.6-201ENST00000612330 2296 ntBASIC16.52■□□□□ 0.24
LDB2O43679 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
LDB2O43679 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
LDB2O43679 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
LDB2O43679 FRMD6-AS1-201ENST00000617151 2229 ntBASIC16.52■□□□□ 0.24
LDB2O43679 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
LDB2O43679 KRT18P13-201ENST00000400056 1290 ntBASIC16.52■□□□□ 0.24
LDB2O43679 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC16.52■□□□□ 0.24
LDB2O43679 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
LDB2O43679 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
LDB2O43679 AC092865.5-201ENST00000545435 363 ntBASIC16.52■□□□□ 0.24
LDB2O43679 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC16.52■□□□□ 0.24
LDB2O43679 AC099522.2-201ENST00000607001 744 ntBASIC16.52■□□□□ 0.24
LDB2O43679 AC006538.3-201ENST00000612495 578 ntBASIC16.52■□□□□ 0.24
LDB2O43679 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
LDB2O43679 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
LDB2O43679 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC16.52■□□□□ 0.24
LDB2O43679 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC16.52■□□□□ 0.23
LDB2O43679 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
LDB2O43679 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
LDB2O43679 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC16.52■□□□□ 0.23
LDB2O43679 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC16.52■□□□□ 0.23
LDB2O43679 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
LDB2O43679 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC16.52■□□□□ 0.23
LDB2O43679 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
LDB2O43679 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC16.52■□□□□ 0.23
LDB2O43679 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC16.51■□□□□ 0.23
LDB2O43679 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
LDB2O43679 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LDB2O43679 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
LDB2O43679 AL596087.1-201ENST00000400979 1969 ntBASIC16.51■□□□□ 0.23
LDB2O43679 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LDB2O43679 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LDB2O43679 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC16.51■□□□□ 0.23
LDB2O43679 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LDB2O43679 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
LDB2O43679 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LDB2O43679 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC16.51■□□□□ 0.23
LDB2O43679 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LDB2O43679 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
LDB2O43679 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LDB2O43679 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC16.51■□□□□ 0.23
LDB2O43679 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
LDB2O43679 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
LDB2O43679 AC002056.1-201ENST00000395613 760 ntBASIC16.51■□□□□ 0.23
LDB2O43679 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
LDB2O43679 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC16.51■□□□□ 0.23
LDB2O43679 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC16.51■□□□□ 0.23
LDB2O43679 AC040169.1-201ENST00000565382 521 ntBASIC16.51■□□□□ 0.23
LDB2O43679 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
LDB2O43679 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC16.51■□□□□ 0.23
LDB2O43679 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
LDB2O43679 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LDB2O43679 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
LDB2O43679 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LDB2O43679 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LDB2O43679 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LDB2O43679 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
LDB2O43679 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC16.51■□□□□ 0.23
LDB2O43679 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
LDB2O43679 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC16.5■□□□□ 0.23
LDB2O43679 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
LDB2O43679 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
LDB2O43679 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LDB2O43679 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC16.5■□□□□ 0.23
LDB2O43679 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LDB2O43679 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LDB2O43679 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
LDB2O43679 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
LDB2O43679 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC16.5■□□□□ 0.23
LDB2O43679 AL513523.2-202ENST00000427283 2040 ntBASIC16.5■□□□□ 0.23
LDB2O43679 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LDB2O43679 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LDB2O43679 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
LDB2O43679 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC16.5■□□□□ 0.23
LDB2O43679 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC16.5■□□□□ 0.23
LDB2O43679 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
LDB2O43679 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LDB2O43679 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC16.5■□□□□ 0.23
LDB2O43679 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LDB2O43679 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
LDB2O43679 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LDB2O43679 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
LDB2O43679 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
LDB2O43679 FABP5-202ENST00000396359 986 ntTSL 5 BASIC16.5■□□□□ 0.23
LDB2O43679 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
LDB2O43679 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC16.5■□□□□ 0.23
LDB2O43679 KRT18P34-201ENST00000488218 1270 ntBASIC16.5■□□□□ 0.23
LDB2O43679 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC16.5■□□□□ 0.23
LDB2O43679 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC16.5■□□□□ 0.23
LDB2O43679 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC16.5■□□□□ 0.23
LDB2O43679 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms