Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
SMKR1H3BMG3 AL671710.1-201ENST00000610245 2349 ntBASIC12.16□□□□□ -0.46
SMKR1H3BMG3 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC12.16□□□□□ -0.46
SMKR1H3BMG3 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC12.16□□□□□ -0.46
SMKR1H3BMG3 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC12.16□□□□□ -0.46
SMKR1H3BMG3 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
SMKR1H3BMG3 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
SMKR1H3BMG3 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
SMKR1H3BMG3 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
SMKR1H3BMG3 LCK-206ENST00000373564 2137 ntTSL 5 BASIC12.16□□□□□ -0.46
SMKR1H3BMG3 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
SMKR1H3BMG3 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC12.16□□□□□ -0.46
SMKR1H3BMG3 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
SMKR1H3BMG3 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
SMKR1H3BMG3 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
SMKR1H3BMG3 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
SMKR1H3BMG3 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
SMKR1H3BMG3 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
SMKR1H3BMG3 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
SMKR1H3BMG3 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC12.16□□□□□ -0.46
SMKR1H3BMG3 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
SMKR1H3BMG3 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC12.16□□□□□ -0.46
SMKR1H3BMG3 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC12.16□□□□□ -0.46
SMKR1H3BMG3 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC12.16□□□□□ -0.46
SMKR1H3BMG3 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC12.16□□□□□ -0.46
SMKR1H3BMG3 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
SMKR1H3BMG3 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC12.16□□□□□ -0.46
SMKR1H3BMG3 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC12.16□□□□□ -0.46
SMKR1H3BMG3 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
SMKR1H3BMG3 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
SMKR1H3BMG3 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC12.16□□□□□ -0.46
SMKR1H3BMG3 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
SMKR1H3BMG3 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
SMKR1H3BMG3 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC12.16□□□□□ -0.46
SMKR1H3BMG3 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
SMKR1H3BMG3 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
SMKR1H3BMG3 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
SMKR1H3BMG3 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
SMKR1H3BMG3 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
SMKR1H3BMG3 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
SMKR1H3BMG3 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC12.16□□□□□ -0.46
SMKR1H3BMG3 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC12.16□□□□□ -0.46
SMKR1H3BMG3 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC12.16□□□□□ -0.46
SMKR1H3BMG3 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
SMKR1H3BMG3 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC12.16□□□□□ -0.46
SMKR1H3BMG3 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
SMKR1H3BMG3 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC12.15□□□□□ -0.46
SMKR1H3BMG3 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC12.15□□□□□ -0.46
SMKR1H3BMG3 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
SMKR1H3BMG3 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC12.15□□□□□ -0.46
SMKR1H3BMG3 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC12.15□□□□□ -0.46
SMKR1H3BMG3 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
SMKR1H3BMG3 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC12.15□□□□□ -0.46
SMKR1H3BMG3 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC12.15□□□□□ -0.46
SMKR1H3BMG3 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC12.15□□□□□ -0.46
SMKR1H3BMG3 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
SMKR1H3BMG3 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
SMKR1H3BMG3 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
SMKR1H3BMG3 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC12.15□□□□□ -0.46
SMKR1H3BMG3 REXO1L8P-201ENST00000604378 1897 ntBASIC12.15□□□□□ -0.46
SMKR1H3BMG3 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
SMKR1H3BMG3 AC097376.2-205ENST00000610159 5334 ntBASIC12.15□□□□□ -0.46
SMKR1H3BMG3 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
SMKR1H3BMG3 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC12.15□□□□□ -0.46
SMKR1H3BMG3 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
SMKR1H3BMG3 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
SMKR1H3BMG3 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
SMKR1H3BMG3 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC12.15□□□□□ -0.46
SMKR1H3BMG3 AC125634.1-201ENST00000438758 1403 ntBASIC12.15□□□□□ -0.46
SMKR1H3BMG3 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC12.15□□□□□ -0.46
SMKR1H3BMG3 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
SMKR1H3BMG3 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
SMKR1H3BMG3 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
SMKR1H3BMG3 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.46
SMKR1H3BMG3 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC12.15□□□□□ -0.46
SMKR1H3BMG3 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
SMKR1H3BMG3 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC12.15□□□□□ -0.46
SMKR1H3BMG3 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
SMKR1H3BMG3 KLF4P1-201ENST00000412782 1185 ntBASIC12.15□□□□□ -0.46
SMKR1H3BMG3 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC12.15□□□□□ -0.46
SMKR1H3BMG3 TSPY20P-201ENST00000450910 630 ntBASIC12.15□□□□□ -0.46
SMKR1H3BMG3 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC12.15□□□□□ -0.46
SMKR1H3BMG3 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
SMKR1H3BMG3 USP36-216ENST00000589424 970 ntTSL 5 BASIC12.15□□□□□ -0.46
SMKR1H3BMG3 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC12.15□□□□□ -0.46
SMKR1H3BMG3 SPEG-225ENST00000617028 815 ntTSL 5 BASIC12.15□□□□□ -0.46
SMKR1H3BMG3 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC12.15□□□□□ -0.46
SMKR1H3BMG3 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
SMKR1H3BMG3 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
SMKR1H3BMG3 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
SMKR1H3BMG3 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC12.15□□□□□ -0.46
SMKR1H3BMG3 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
SMKR1H3BMG3 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC12.15□□□□□ -0.46
SMKR1H3BMG3 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
SMKR1H3BMG3 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
SMKR1H3BMG3 AC006058.4-201ENST00000624016 1670 ntBASIC12.15□□□□□ -0.46
SMKR1H3BMG3 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
SMKR1H3BMG3 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC12.15□□□□□ -0.46
SMKR1H3BMG3 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.46
SMKR1H3BMG3 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 57.9 ms