Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC31.13■■■□□ 2.57
SHROOM4Q9ULL8 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
SHROOM4Q9ULL8 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC31.13■■■□□ 2.57
SHROOM4Q9ULL8 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC31.13■■■□□ 2.57
SHROOM4Q9ULL8 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
SHROOM4Q9ULL8 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
SHROOM4Q9ULL8 AL512652.2-201ENST00000625156 1716 ntBASIC31.13■■■□□ 2.57
SHROOM4Q9ULL8 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC31.13■■■□□ 2.57
SHROOM4Q9ULL8 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC31.13■■■□□ 2.57
SHROOM4Q9ULL8 NME6-203ENST00000415644 849 ntTSL 2 BASIC31.13■■■□□ 2.57
SHROOM4Q9ULL8 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC31.13■■■□□ 2.57
SHROOM4Q9ULL8 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC31.13■■■□□ 2.57
SHROOM4Q9ULL8 AC015936.2-201ENST00000593177 259 ntBASIC31.13■■■□□ 2.57
SHROOM4Q9ULL8 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC31.13■■■□□ 2.57
SHROOM4Q9ULL8 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC31.13■■■□□ 2.57
SHROOM4Q9ULL8 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
SHROOM4Q9ULL8 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC31.13■■■□□ 2.57
SHROOM4Q9ULL8 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC31.12■■■□□ 2.57
SHROOM4Q9ULL8 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC31.12■■■□□ 2.57
SHROOM4Q9ULL8 AL391256.1-201ENST00000443260 1855 ntBASIC31.12■■■□□ 2.57
SHROOM4Q9ULL8 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC31.12■■■□□ 2.57
SHROOM4Q9ULL8 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC31.12■■■□□ 2.57
SHROOM4Q9ULL8 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
SHROOM4Q9ULL8 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC31.12■■■□□ 2.57
SHROOM4Q9ULL8 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC31.12■■■□□ 2.57
SHROOM4Q9ULL8 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC31.12■■■□□ 2.57
SHROOM4Q9ULL8 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
SHROOM4Q9ULL8 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC31.12■■■□□ 2.57
SHROOM4Q9ULL8 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
SHROOM4Q9ULL8 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC31.12■■■□□ 2.57
SHROOM4Q9ULL8 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC31.12■■■□□ 2.57
SHROOM4Q9ULL8 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
SHROOM4Q9ULL8 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC31.12■■■□□ 2.57
SHROOM4Q9ULL8 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC31.12■■■□□ 2.57
SHROOM4Q9ULL8 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC31.12■■■□□ 2.57
SHROOM4Q9ULL8 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC31.12■■■□□ 2.57
SHROOM4Q9ULL8 ELK1P1-201ENST00000485699 580 ntBASIC31.12■■■□□ 2.57
SHROOM4Q9ULL8 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC31.12■■■□□ 2.57
SHROOM4Q9ULL8 MFF-223ENST00000524634 647 ntTSL 2 BASIC31.12■■■□□ 2.57
SHROOM4Q9ULL8 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC31.12■■■□□ 2.57
SHROOM4Q9ULL8 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC31.12■■■□□ 2.57
SHROOM4Q9ULL8 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC31.12■■■□□ 2.57
SHROOM4Q9ULL8 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC31.12■■■□□ 2.57
SHROOM4Q9ULL8 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
SHROOM4Q9ULL8 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC31.11■■■□□ 2.57
SHROOM4Q9ULL8 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC31.11■■■□□ 2.57
SHROOM4Q9ULL8 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
SHROOM4Q9ULL8 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
SHROOM4Q9ULL8 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC31.11■■■□□ 2.57
SHROOM4Q9ULL8 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
SHROOM4Q9ULL8 BNIP3P42-201ENST00000454982 569 ntBASIC31.11■■■□□ 2.57
SHROOM4Q9ULL8 CD81-207ENST00000481687 890 ntTSL 2 BASIC31.11■■■□□ 2.57
SHROOM4Q9ULL8 BNIP3P29-201ENST00000598302 571 ntBASIC31.11■■■□□ 2.57
SHROOM4Q9ULL8 AC011447.5-201ENST00000616168 564 ntBASIC31.11■■■□□ 2.57
SHROOM4Q9ULL8 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC31.11■■■□□ 2.57
SHROOM4Q9ULL8 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC31.11■■■□□ 2.57
SHROOM4Q9ULL8 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC31.11■■■□□ 2.57
SHROOM4Q9ULL8 AC005915.1-201ENST00000624912 2018 ntBASIC31.11■■■□□ 2.57
SHROOM4Q9ULL8 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
SHROOM4Q9ULL8 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
SHROOM4Q9ULL8 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC31.11■■■□□ 2.57
SHROOM4Q9ULL8 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC31.11■■■□□ 2.57
SHROOM4Q9ULL8 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
SHROOM4Q9ULL8 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
SHROOM4Q9ULL8 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
SHROOM4Q9ULL8 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
SHROOM4Q9ULL8 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC31.1■■■□□ 2.57
SHROOM4Q9ULL8 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC31.1■■■□□ 2.57
SHROOM4Q9ULL8 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
SHROOM4Q9ULL8 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
SHROOM4Q9ULL8 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC31.1■■■□□ 2.57
SHROOM4Q9ULL8 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC31.1■■■□□ 2.57
SHROOM4Q9ULL8 ACTBP11-201ENST00000436287 1126 ntBASIC31.1■■■□□ 2.57
SHROOM4Q9ULL8 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC31.1■■■□□ 2.57
SHROOM4Q9ULL8 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC31.1■■■□□ 2.57
SHROOM4Q9ULL8 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC31.1■■■□□ 2.57
SHROOM4Q9ULL8 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC31.1■■■□□ 2.57
SHROOM4Q9ULL8 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC31.1■■■□□ 2.57
SHROOM4Q9ULL8 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC31.1■■■□□ 2.57
SHROOM4Q9ULL8 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC31.1■■■□□ 2.57
SHROOM4Q9ULL8 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
SHROOM4Q9ULL8 PFAS-212ENST00000625942 396 ntTSL 5 BASIC31.1■■■□□ 2.57
SHROOM4Q9ULL8 AC020907.1-201ENST00000616460 1350 ntBASIC31.1■■■□□ 2.57
SHROOM4Q9ULL8 KRT8P39-201ENST00000396270 1433 ntBASIC31.1■■■□□ 2.57
SHROOM4Q9ULL8 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC31.1■■■□□ 2.57
SHROOM4Q9ULL8 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC31.1■■■□□ 2.57
SHROOM4Q9ULL8 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
SHROOM4Q9ULL8 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC31.1■■■□□ 2.57
SHROOM4Q9ULL8 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC31.1■■■□□ 2.57
SHROOM4Q9ULL8 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
SHROOM4Q9ULL8 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
SHROOM4Q9ULL8 GCK-202ENST00000345378 2421 ntTSL 2 BASIC31.1■■■□□ 2.57
SHROOM4Q9ULL8 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC31.1■■■□□ 2.57
SHROOM4Q9ULL8 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC31.09■■■□□ 2.57
SHROOM4Q9ULL8 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC31.09■■■□□ 2.57
SHROOM4Q9ULL8 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC31.09■■■□□ 2.57
SHROOM4Q9ULL8 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC31.09■■■□□ 2.57
SHROOM4Q9ULL8 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC31.09■■■□□ 2.57
SHROOM4Q9ULL8 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC31.09■■■□□ 2.57
SHROOM4Q9ULL8 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC31.09■■■□□ 2.57
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms