Protein–RNA interactions for Protein: Q99569

PKP4, Plakophilin-4, humanhuman

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKP4Q99569 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PKP4Q99569 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
PKP4Q99569 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
PKP4Q99569 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
PKP4Q99569 PMP22-202ENST00000395936 816 ntTSL 3 BASIC16.12■□□□□ 0.17
PKP4Q99569 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PKP4Q99569 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PKP4Q99569 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC16.12■□□□□ 0.17
PKP4Q99569 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC16.12■□□□□ 0.17
PKP4Q99569 FIS1-203ENST00000442303 631 ntTSL 3 BASIC16.12■□□□□ 0.17
PKP4Q99569 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC16.12■□□□□ 0.17
PKP4Q99569 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC16.12■□□□□ 0.17
PKP4Q99569 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
PKP4Q99569 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC16.12■□□□□ 0.17
PKP4Q99569 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC16.12■□□□□ 0.17
PKP4Q99569 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC16.12■□□□□ 0.17
PKP4Q99569 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
PKP4Q99569 AC020765.3-201ENST00000613051 740 ntBASIC16.12■□□□□ 0.17
PKP4Q99569 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
PKP4Q99569 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC16.12■□□□□ 0.17
PKP4Q99569 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
PKP4Q99569 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC16.12■□□□□ 0.17
PKP4Q99569 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC16.12■□□□□ 0.17
PKP4Q99569 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
PKP4Q99569 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PKP4Q99569 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
PKP4Q99569 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
PKP4Q99569 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC16.12■□□□□ 0.17
PKP4Q99569 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC16.12■□□□□ 0.17
PKP4Q99569 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PKP4Q99569 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
PKP4Q99569 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PKP4Q99569 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
PKP4Q99569 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC16.11■□□□□ 0.17
PKP4Q99569 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC16.11■□□□□ 0.17
PKP4Q99569 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PKP4Q99569 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
PKP4Q99569 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PKP4Q99569 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
PKP4Q99569 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC16.11■□□□□ 0.17
PKP4Q99569 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PKP4Q99569 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
PKP4Q99569 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
PKP4Q99569 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC16.11■□□□□ 0.17
PKP4Q99569 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PKP4Q99569 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
PKP4Q99569 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PKP4Q99569 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PKP4Q99569 MCCD1P2-201ENST00000423228 335 ntBASIC16.11■□□□□ 0.17
PKP4Q99569 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC16.11■□□□□ 0.17
PKP4Q99569 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PKP4Q99569 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC16.11■□□□□ 0.17
PKP4Q99569 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PKP4Q99569 WT1-209ENST00000530998 2421 ntTSL 2 BASIC16.11■□□□□ 0.17
PKP4Q99569 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC16.11■□□□□ 0.17
PKP4Q99569 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PKP4Q99569 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC16.11■□□□□ 0.17
PKP4Q99569 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC16.11■□□□□ 0.17
PKP4Q99569 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PKP4Q99569 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
PKP4Q99569 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC16.11■□□□□ 0.17
PKP4Q99569 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
PKP4Q99569 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC16.11■□□□□ 0.17
PKP4Q99569 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
PKP4Q99569 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PKP4Q99569 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
PKP4Q99569 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PKP4Q99569 AC092364.2-201ENST00000596710 2692 ntBASIC16.11■□□□□ 0.17
PKP4Q99569 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PKP4Q99569 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PKP4Q99569 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
PKP4Q99569 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
PKP4Q99569 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
PKP4Q99569 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PKP4Q99569 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC16.1■□□□□ 0.17
PKP4Q99569 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC16.1■□□□□ 0.17
PKP4Q99569 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PKP4Q99569 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PKP4Q99569 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC16.1■□□□□ 0.17
PKP4Q99569 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
PKP4Q99569 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
PKP4Q99569 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PKP4Q99569 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PKP4Q99569 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC16.1■□□□□ 0.17
PKP4Q99569 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
PKP4Q99569 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PKP4Q99569 AC002056.1-201ENST00000395613 760 ntBASIC16.1■□□□□ 0.17
PKP4Q99569 AC004832.2-201ENST00000426397 482 ntBASIC16.1■□□□□ 0.17
PKP4Q99569 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PKP4Q99569 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC16.1■□□□□ 0.17
PKP4Q99569 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
PKP4Q99569 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
PKP4Q99569 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PKP4Q99569 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC16.1■□□□□ 0.17
PKP4Q99569 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PKP4Q99569 WDR88-203ENST00000592765 651 ntTSL 5 BASIC16.1■□□□□ 0.17
PKP4Q99569 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC16.1■□□□□ 0.17
PKP4Q99569 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC16.1■□□□□ 0.17
PKP4Q99569 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PKP4Q99569 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms