Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 RN7SL589P-201ENST00000481268 310 ntBASIC16.46■□□□□ 0.23
VPS35Q96QK1 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC16.46■□□□□ 0.23
VPS35Q96QK1 DHDH-204ENST00000523250 634 ntTSL 5 BASIC16.46■□□□□ 0.23
VPS35Q96QK1 CFL1-202ENST00000524553 860 ntTSL 2 BASIC16.46■□□□□ 0.23
VPS35Q96QK1 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC16.46■□□□□ 0.23
VPS35Q96QK1 PUS1-205ENST00000535067 838 ntTSL 3 BASIC16.46■□□□□ 0.23
VPS35Q96QK1 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC16.46■□□□□ 0.23
VPS35Q96QK1 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
VPS35Q96QK1 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
VPS35Q96QK1 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC16.46■□□□□ 0.23
VPS35Q96QK1 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC16.46■□□□□ 0.23
VPS35Q96QK1 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VPS35Q96QK1 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC16.46■□□□□ 0.23
VPS35Q96QK1 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
VPS35Q96QK1 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VPS35Q96QK1 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VPS35Q96QK1 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
VPS35Q96QK1 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
VPS35Q96QK1 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC16.46■□□□□ 0.23
VPS35Q96QK1 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC16.46■□□□□ 0.23
VPS35Q96QK1 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC16.46■□□□□ 0.23
VPS35Q96QK1 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
VPS35Q96QK1 GPAA1P2-202ENST00000606848 1787 ntBASIC16.46■□□□□ 0.22
VPS35Q96QK1 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
VPS35Q96QK1 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.22
VPS35Q96QK1 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
VPS35Q96QK1 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
VPS35Q96QK1 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS35Q96QK1 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
VPS35Q96QK1 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
VPS35Q96QK1 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC16.45■□□□□ 0.22
VPS35Q96QK1 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
VPS35Q96QK1 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS35Q96QK1 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC16.45■□□□□ 0.22
VPS35Q96QK1 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS35Q96QK1 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
VPS35Q96QK1 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC16.45■□□□□ 0.22
VPS35Q96QK1 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS35Q96QK1 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS35Q96QK1 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC16.45■□□□□ 0.22
VPS35Q96QK1 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC16.45■□□□□ 0.22
VPS35Q96QK1 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
VPS35Q96QK1 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC16.45■□□□□ 0.22
VPS35Q96QK1 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC16.45■□□□□ 0.22
VPS35Q96QK1 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC16.45■□□□□ 0.22
VPS35Q96QK1 INO80E-210ENST00000567705 880 ntTSL 3 BASIC16.45■□□□□ 0.22
VPS35Q96QK1 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC16.45■□□□□ 0.22
VPS35Q96QK1 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC16.45■□□□□ 0.22
VPS35Q96QK1 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC16.45■□□□□ 0.22
VPS35Q96QK1 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
VPS35Q96QK1 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS35Q96QK1 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC16.45■□□□□ 0.22
VPS35Q96QK1 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
VPS35Q96QK1 AC020765.3-201ENST00000613051 740 ntBASIC16.45■□□□□ 0.22
VPS35Q96QK1 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC16.45■□□□□ 0.22
VPS35Q96QK1 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS35Q96QK1 AC016027.1-202ENST00000607927 1699 ntBASIC16.45■□□□□ 0.22
VPS35Q96QK1 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
VPS35Q96QK1 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC16.45■□□□□ 0.22
VPS35Q96QK1 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC16.45■□□□□ 0.22
VPS35Q96QK1 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS35Q96QK1 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
VPS35Q96QK1 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS35Q96QK1 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC16.45■□□□□ 0.22
VPS35Q96QK1 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
VPS35Q96QK1 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
VPS35Q96QK1 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS35Q96QK1 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS35Q96QK1 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC16.45■□□□□ 0.22
VPS35Q96QK1 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC16.44■□□□□ 0.22
VPS35Q96QK1 AL596257.1-201ENST00000641463 2694 ntBASIC16.44■□□□□ 0.22
VPS35Q96QK1 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS35Q96QK1 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VPS35Q96QK1 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC16.44■□□□□ 0.22
VPS35Q96QK1 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS35Q96QK1 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC16.44■□□□□ 0.22
VPS35Q96QK1 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC16.44■□□□□ 0.22
VPS35Q96QK1 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
VPS35Q96QK1 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
VPS35Q96QK1 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS35Q96QK1 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS35Q96QK1 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC16.44■□□□□ 0.22
VPS35Q96QK1 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS35Q96QK1 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS35Q96QK1 DPM2-202ENST00000373110 738 ntTSL 2 BASIC16.44■□□□□ 0.22
VPS35Q96QK1 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
VPS35Q96QK1 AC211486.1-202ENST00000416371 468 ntBASIC16.44■□□□□ 0.22
VPS35Q96QK1 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC16.44■□□□□ 0.22
VPS35Q96QK1 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
VPS35Q96QK1 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC16.44■□□□□ 0.22
VPS35Q96QK1 KRT18P34-201ENST00000488218 1270 ntBASIC16.44■□□□□ 0.22
VPS35Q96QK1 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC16.44■□□□□ 0.22
VPS35Q96QK1 AC211476.1-201ENST00000503899 468 ntBASIC16.44■□□□□ 0.22
VPS35Q96QK1 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC16.44■□□□□ 0.22
VPS35Q96QK1 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC16.44■□□□□ 0.22
VPS35Q96QK1 AL135744.1-201ENST00000565098 629 ntBASIC16.44■□□□□ 0.22
VPS35Q96QK1 AC026120.1-201ENST00000611536 926 ntBASIC16.44■□□□□ 0.22
VPS35Q96QK1 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
VPS35Q96QK1 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS35Q96QK1 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC16.44■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms