Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC16.21■□□□□ 0.19
PTCHD3Q3KNS1 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PTCHD3Q3KNS1 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PTCHD3Q3KNS1 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
PTCHD3Q3KNS1 CD82-202ENST00000342935 967 ntTSL 5 BASIC16.21■□□□□ 0.19
PTCHD3Q3KNS1 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC16.21■□□□□ 0.19
PTCHD3Q3KNS1 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC16.21■□□□□ 0.19
PTCHD3Q3KNS1 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PTCHD3Q3KNS1 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC16.21■□□□□ 0.19
PTCHD3Q3KNS1 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PTCHD3Q3KNS1 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC16.21■□□□□ 0.19
PTCHD3Q3KNS1 SMN2-210ENST00000511812 867 ntTSL 2 BASIC16.21■□□□□ 0.19
PTCHD3Q3KNS1 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC16.21■□□□□ 0.19
PTCHD3Q3KNS1 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC16.21■□□□□ 0.19
PTCHD3Q3KNS1 PDPK2P-202ENST00000562415 1191 ntBASIC16.21■□□□□ 0.19
PTCHD3Q3KNS1 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PTCHD3Q3KNS1 MIR4469-201ENST00000583919 79 ntBASIC16.21■□□□□ 0.19
PTCHD3Q3KNS1 MIR4515-201ENST00000584082 81 ntBASIC16.21■□□□□ 0.19
PTCHD3Q3KNS1 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC16.21■□□□□ 0.19
PTCHD3Q3KNS1 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PTCHD3Q3KNS1 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PTCHD3Q3KNS1 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
PTCHD3Q3KNS1 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PTCHD3Q3KNS1 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC16.21■□□□□ 0.19
PTCHD3Q3KNS1 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
PTCHD3Q3KNS1 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.18
PTCHD3Q3KNS1 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
PTCHD3Q3KNS1 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.18
PTCHD3Q3KNS1 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
PTCHD3Q3KNS1 HARS-203ENST00000431330 1774 ntTSL 2 BASIC16.21■□□□□ 0.18
PTCHD3Q3KNS1 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PTCHD3Q3KNS1 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PTCHD3Q3KNS1 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PTCHD3Q3KNS1 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PTCHD3Q3KNS1 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PTCHD3Q3KNS1 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PTCHD3Q3KNS1 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC16.2■□□□□ 0.18
PTCHD3Q3KNS1 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
PTCHD3Q3KNS1 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
PTCHD3Q3KNS1 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
PTCHD3Q3KNS1 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PTCHD3Q3KNS1 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PTCHD3Q3KNS1 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
PTCHD3Q3KNS1 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
PTCHD3Q3KNS1 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PTCHD3Q3KNS1 HTR5BP-201ENST00000430851 1154 ntBASIC16.2■□□□□ 0.18
PTCHD3Q3KNS1 RHOQP3-201ENST00000437982 621 ntBASIC16.2■□□□□ 0.18
PTCHD3Q3KNS1 STARD13-205ENST00000439831 945 ntTSL 2 BASIC16.2■□□□□ 0.18
PTCHD3Q3KNS1 DNAJB3-202ENST00000449667 1266 ntBASIC16.2■□□□□ 0.18
PTCHD3Q3KNS1 AL513480.1-201ENST00000451731 511 ntBASIC16.2■□□□□ 0.18
PTCHD3Q3KNS1 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC16.2■□□□□ 0.18
PTCHD3Q3KNS1 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC16.2■□□□□ 0.18
PTCHD3Q3KNS1 AL596442.2-201ENST00000610240 980 ntBASIC16.2■□□□□ 0.18
PTCHD3Q3KNS1 C20orf181-201ENST00000623918 480 ntBASIC16.2■□□□□ 0.18
PTCHD3Q3KNS1 AC079781.4-201ENST00000641908 219 ntBASIC16.2■□□□□ 0.18
PTCHD3Q3KNS1 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC16.2■□□□□ 0.18
PTCHD3Q3KNS1 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PTCHD3Q3KNS1 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PTCHD3Q3KNS1 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PTCHD3Q3KNS1 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
PTCHD3Q3KNS1 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC16.2■□□□□ 0.18
PTCHD3Q3KNS1 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PTCHD3Q3KNS1 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
PTCHD3Q3KNS1 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
PTCHD3Q3KNS1 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
PTCHD3Q3KNS1 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PTCHD3Q3KNS1 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PTCHD3Q3KNS1 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC16.2■□□□□ 0.18
PTCHD3Q3KNS1 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC16.19■□□□□ 0.18
PTCHD3Q3KNS1 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PTCHD3Q3KNS1 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC16.19■□□□□ 0.18
PTCHD3Q3KNS1 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PTCHD3Q3KNS1 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC16.19■□□□□ 0.18
PTCHD3Q3KNS1 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PTCHD3Q3KNS1 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC16.19■□□□□ 0.18
PTCHD3Q3KNS1 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PTCHD3Q3KNS1 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC16.19■□□□□ 0.18
PTCHD3Q3KNS1 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PTCHD3Q3KNS1 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
PTCHD3Q3KNS1 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
PTCHD3Q3KNS1 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PTCHD3Q3KNS1 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC16.19■□□□□ 0.18
PTCHD3Q3KNS1 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PTCHD3Q3KNS1 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PTCHD3Q3KNS1 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
PTCHD3Q3KNS1 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PTCHD3Q3KNS1 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PTCHD3Q3KNS1 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC16.19■□□□□ 0.18
PTCHD3Q3KNS1 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC16.19■□□□□ 0.18
PTCHD3Q3KNS1 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC16.19■□□□□ 0.18
PTCHD3Q3KNS1 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PTCHD3Q3KNS1 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.18
PTCHD3Q3KNS1 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC16.19■□□□□ 0.18
PTCHD3Q3KNS1 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC16.19■□□□□ 0.18
PTCHD3Q3KNS1 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PTCHD3Q3KNS1 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC16.19■□□□□ 0.18
PTCHD3Q3KNS1 AC023141.13-201ENST00000604991 943 ntBASIC16.19■□□□□ 0.18
PTCHD3Q3KNS1 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC16.19■□□□□ 0.18
PTCHD3Q3KNS1 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC16.19■□□□□ 0.18
PTCHD3Q3KNS1 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 58.9 ms