Protein–RNA interactions for Protein: Q2M329

CCDC96, Coiled-coil domain-containing protein 96, humanhuman

Predictions only

Length 555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC96Q2M329 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC96Q2M329 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC96Q2M329 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC96Q2M329 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC19.28■□□□□ 0.68
CCDC96Q2M329 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC19.28■□□□□ 0.68
CCDC96Q2M329 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
CCDC96Q2M329 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC19.28■□□□□ 0.68
CCDC96Q2M329 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC96Q2M329 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC19.28■□□□□ 0.68
CCDC96Q2M329 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC96Q2M329 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
CCDC96Q2M329 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC96Q2M329 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC19.27■□□□□ 0.68
CCDC96Q2M329 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC19.27■□□□□ 0.68
CCDC96Q2M329 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC19.27■□□□□ 0.68
CCDC96Q2M329 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC96Q2M329 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC19.27■□□□□ 0.68
CCDC96Q2M329 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC96Q2M329 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
CCDC96Q2M329 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC96Q2M329 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC19.27■□□□□ 0.68
CCDC96Q2M329 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
CCDC96Q2M329 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC96Q2M329 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC19.27■□□□□ 0.68
CCDC96Q2M329 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC19.27■□□□□ 0.68
CCDC96Q2M329 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
CCDC96Q2M329 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC19.27■□□□□ 0.68
CCDC96Q2M329 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC96Q2M329 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC19.27■□□□□ 0.68
CCDC96Q2M329 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC19.27■□□□□ 0.68
CCDC96Q2M329 AC026150.2-201ENST00000564693 1156 ntBASIC19.27■□□□□ 0.68
CCDC96Q2M329 NKG7-205ENST00000600427 520 ntTSL 3 BASIC19.27■□□□□ 0.68
CCDC96Q2M329 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC19.27■□□□□ 0.68
CCDC96Q2M329 AL139011.1-202ENST00000642063 584 ntBASIC19.27■□□□□ 0.68
CCDC96Q2M329 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
CCDC96Q2M329 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC96Q2M329 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC96Q2M329 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.67
CCDC96Q2M329 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
CCDC96Q2M329 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CCDC96Q2M329 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CCDC96Q2M329 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.67
CCDC96Q2M329 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.67
CCDC96Q2M329 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC19.27■□□□□ 0.67
CCDC96Q2M329 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.67
CCDC96Q2M329 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
CCDC96Q2M329 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC96Q2M329 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC96Q2M329 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC96Q2M329 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC96Q2M329 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC96Q2M329 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC96Q2M329 AL512652.2-201ENST00000625156 1716 ntBASIC19.26■□□□□ 0.67
CCDC96Q2M329 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC96Q2M329 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
CCDC96Q2M329 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC96Q2M329 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC96Q2M329 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC96Q2M329 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC96Q2M329 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC96Q2M329 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC96Q2M329 HLA-DRB6-201ENST00000411500 1235 ntBASIC19.26■□□□□ 0.67
CCDC96Q2M329 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC19.26■□□□□ 0.67
CCDC96Q2M329 SPDYE14P-201ENST00000442619 822 ntBASIC19.26■□□□□ 0.67
CCDC96Q2M329 CNN2P2-201ENST00000443536 909 ntBASIC19.26■□□□□ 0.67
CCDC96Q2M329 CNN2P3-201ENST00000450201 906 ntBASIC19.26■□□□□ 0.67
CCDC96Q2M329 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC19.26■□□□□ 0.67
CCDC96Q2M329 AC105233.2-201ENST00000523697 349 ntBASIC19.26■□□□□ 0.67
CCDC96Q2M329 AF228730.5-201ENST00000530288 346 ntBASIC19.26■□□□□ 0.67
CCDC96Q2M329 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC19.26■□□□□ 0.67
CCDC96Q2M329 AL136317.3-201ENST00000618497 906 ntBASIC19.26■□□□□ 0.67
CCDC96Q2M329 AP001059.3-201ENST00000619053 235 ntBASIC19.26■□□□□ 0.67
CCDC96Q2M329 RAB34-224ENST00000636513 888 ntTSL 5 BASIC19.26■□□□□ 0.67
CCDC96Q2M329 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC96Q2M329 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
CCDC96Q2M329 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC19.26■□□□□ 0.67
CCDC96Q2M329 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC96Q2M329 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC96Q2M329 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC96Q2M329 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC96Q2M329 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
CCDC96Q2M329 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC96Q2M329 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC96Q2M329 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC96Q2M329 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC96Q2M329 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
CCDC96Q2M329 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC19.25■□□□□ 0.67
CCDC96Q2M329 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC96Q2M329 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC96Q2M329 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC19.25■□□□□ 0.67
CCDC96Q2M329 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC96Q2M329 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC96Q2M329 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
CCDC96Q2M329 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC96Q2M329 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC19.25■□□□□ 0.67
CCDC96Q2M329 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC19.25■□□□□ 0.67
CCDC96Q2M329 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC19.25■□□□□ 0.67
CCDC96Q2M329 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC19.25■□□□□ 0.67
CCDC96Q2M329 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC96Q2M329 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms