Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC19.18■□□□□ 0.66
SF3A1Q15459 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SF3A1Q15459 PMS2P1-201ENST00000431037 1228 ntBASIC19.18■□□□□ 0.66
SF3A1Q15459 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SF3A1Q15459 AC018712.1-201ENST00000455767 687 ntBASIC19.18■□□□□ 0.66
SF3A1Q15459 AC136632.2-201ENST00000512891 861 ntBASIC19.18■□□□□ 0.66
SF3A1Q15459 AC012640.2-201ENST00000561606 901 ntBASIC19.18■□□□□ 0.66
SF3A1Q15459 AL121912.1-201ENST00000603683 238 ntBASIC19.18■□□□□ 0.66
SF3A1Q15459 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC19.18■□□□□ 0.66
SF3A1Q15459 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
SF3A1Q15459 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC19.18■□□□□ 0.66
SF3A1Q15459 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
SF3A1Q15459 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
SF3A1Q15459 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
SF3A1Q15459 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SF3A1Q15459 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC19.18■□□□□ 0.66
SF3A1Q15459 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SF3A1Q15459 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SF3A1Q15459 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC19.18■□□□□ 0.66
SF3A1Q15459 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SF3A1Q15459 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC19.17■□□□□ 0.66
SF3A1Q15459 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
SF3A1Q15459 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SF3A1Q15459 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC19.17■□□□□ 0.66
SF3A1Q15459 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC19.17■□□□□ 0.66
SF3A1Q15459 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
SF3A1Q15459 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SF3A1Q15459 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
SF3A1Q15459 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SF3A1Q15459 PC-214ENST00000628663 1470 ntTSL 5 BASIC19.17■□□□□ 0.66
SF3A1Q15459 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SF3A1Q15459 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
SF3A1Q15459 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SF3A1Q15459 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SF3A1Q15459 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
SF3A1Q15459 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC19.17■□□□□ 0.66
SF3A1Q15459 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SF3A1Q15459 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC19.17■□□□□ 0.66
SF3A1Q15459 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC19.17■□□□□ 0.66
SF3A1Q15459 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC19.17■□□□□ 0.66
SF3A1Q15459 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC19.17■□□□□ 0.66
SF3A1Q15459 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC19.17■□□□□ 0.66
SF3A1Q15459 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SF3A1Q15459 AL691432.3-201ENST00000621860 400 ntBASIC19.17■□□□□ 0.66
SF3A1Q15459 AC008735.5-201ENST00000623544 497 ntBASIC19.17■□□□□ 0.66
SF3A1Q15459 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC19.17■□□□□ 0.66
SF3A1Q15459 AC148477.8-201ENST00000624298 468 ntBASIC19.17■□□□□ 0.66
SF3A1Q15459 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SF3A1Q15459 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SF3A1Q15459 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SF3A1Q15459 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC19.17■□□□□ 0.66
SF3A1Q15459 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SF3A1Q15459 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SF3A1Q15459 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC19.17■□□□□ 0.66
SF3A1Q15459 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
SF3A1Q15459 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SF3A1Q15459 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SF3A1Q15459 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC19.17■□□□□ 0.66
SF3A1Q15459 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SF3A1Q15459 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
SF3A1Q15459 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC19.17■□□□□ 0.66
SF3A1Q15459 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC19.17■□□□□ 0.66
SF3A1Q15459 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SF3A1Q15459 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SF3A1Q15459 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC19.16■□□□□ 0.66
SF3A1Q15459 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC19.16■□□□□ 0.66
SF3A1Q15459 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC19.16■□□□□ 0.66
SF3A1Q15459 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SF3A1Q15459 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC19.16■□□□□ 0.66
SF3A1Q15459 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SF3A1Q15459 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
SF3A1Q15459 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SF3A1Q15459 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC19.16■□□□□ 0.66
SF3A1Q15459 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
SF3A1Q15459 CICP6-201ENST00000457191 2729 ntBASIC19.16■□□□□ 0.66
SF3A1Q15459 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SF3A1Q15459 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
SF3A1Q15459 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC19.16■□□□□ 0.66
SF3A1Q15459 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC19.16■□□□□ 0.66
SF3A1Q15459 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC19.16■□□□□ 0.66
SF3A1Q15459 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC19.16■□□□□ 0.66
SF3A1Q15459 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC19.16■□□□□ 0.66
SF3A1Q15459 ETFA-208ENST00000559602 792 ntTSL 3 BASIC19.16■□□□□ 0.66
SF3A1Q15459 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC19.16■□□□□ 0.66
SF3A1Q15459 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
SF3A1Q15459 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SF3A1Q15459 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
SF3A1Q15459 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SF3A1Q15459 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SF3A1Q15459 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
SF3A1Q15459 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SF3A1Q15459 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC19.16■□□□□ 0.66
SF3A1Q15459 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SF3A1Q15459 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SF3A1Q15459 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
SF3A1Q15459 TSPY26P-202ENST00000565928 3884 ntBASIC19.16■□□□□ 0.66
SF3A1Q15459 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SF3A1Q15459 AP002414.3-201ENST00000589352 1468 ntBASIC19.16■□□□□ 0.66
SF3A1Q15459 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC19.16■□□□□ 0.66
SF3A1Q15459 AC067930.6-201ENST00000623257 4947 ntBASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms