Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC17.25■□□□□ 0.35
CDH6P55285 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
CDH6P55285 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
CDH6P55285 AL391005.1-201ENST00000623953 2435 ntBASIC17.25■□□□□ 0.35
CDH6P55285 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
CDH6P55285 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CDH6P55285 AC104109.2-201ENST00000602919 1418 ntBASIC17.25■□□□□ 0.35
CDH6P55285 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDH6P55285 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CDH6P55285 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDH6P55285 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDH6P55285 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDH6P55285 AL590627.1-203ENST00000421194 1026 ntBASIC17.25■□□□□ 0.35
CDH6P55285 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC17.25■□□□□ 0.35
CDH6P55285 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC17.25■□□□□ 0.35
CDH6P55285 AL031432.2-201ENST00000566714 459 ntBASIC17.25■□□□□ 0.35
CDH6P55285 AL928711.1-201ENST00000570165 459 ntBASIC17.25■□□□□ 0.35
CDH6P55285 AL645728.2-201ENST00000641974 660 ntBASIC17.25■□□□□ 0.35
CDH6P55285 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDH6P55285 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
CDH6P55285 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC17.25■□□□□ 0.35
CDH6P55285 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDH6P55285 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDH6P55285 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDH6P55285 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDH6P55285 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC17.25■□□□□ 0.35
CDH6P55285 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CDH6P55285 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDH6P55285 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CDH6P55285 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC17.25■□□□□ 0.35
CDH6P55285 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
CDH6P55285 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDH6P55285 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC17.25■□□□□ 0.35
CDH6P55285 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC17.25■□□□□ 0.35
CDH6P55285 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDH6P55285 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CDH6P55285 AC026691.1-201ENST00000602502 2017 ntBASIC17.25■□□□□ 0.35
CDH6P55285 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CDH6P55285 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
CDH6P55285 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC17.24■□□□□ 0.35
CDH6P55285 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
CDH6P55285 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CDH6P55285 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CDH6P55285 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CDH6P55285 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
CDH6P55285 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC17.24■□□□□ 0.35
CDH6P55285 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CDH6P55285 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC17.24■□□□□ 0.35
CDH6P55285 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CDH6P55285 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CDH6P55285 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC17.24■□□□□ 0.35
CDH6P55285 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC17.24■□□□□ 0.35
CDH6P55285 RNU1-129P-201ENST00000384064 167 ntBASIC17.24■□□□□ 0.35
CDH6P55285 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CDH6P55285 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
CDH6P55285 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
CDH6P55285 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC17.24■□□□□ 0.35
CDH6P55285 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC17.24■□□□□ 0.35
CDH6P55285 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC17.24■□□□□ 0.35
CDH6P55285 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC17.24■□□□□ 0.35
CDH6P55285 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC17.24■□□□□ 0.35
CDH6P55285 AC096734.2-201ENST00000562054 433 ntBASIC17.24■□□□□ 0.35
CDH6P55285 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC17.24■□□□□ 0.35
CDH6P55285 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC17.24■□□□□ 0.35
CDH6P55285 U1.21-201ENST00000580816 167 ntBASIC17.24■□□□□ 0.35
CDH6P55285 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC17.24■□□□□ 0.35
CDH6P55285 RPS15-207ENST00000591032 550 ntTSL 3 BASIC17.24■□□□□ 0.35
CDH6P55285 RPS15-212ENST00000593052 629 ntTSL 2 BASIC17.24■□□□□ 0.35
CDH6P55285 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC17.24■□□□□ 0.35
CDH6P55285 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC17.24■□□□□ 0.35
CDH6P55285 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CDH6P55285 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
CDH6P55285 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
CDH6P55285 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC17.24■□□□□ 0.35
CDH6P55285 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC17.24■□□□□ 0.35
CDH6P55285 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
CDH6P55285 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CDH6P55285 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
CDH6P55285 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CDH6P55285 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
CDH6P55285 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CDH6P55285 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC17.24■□□□□ 0.35
CDH6P55285 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC17.24■□□□□ 0.35
CDH6P55285 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CDH6P55285 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
CDH6P55285 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
CDH6P55285 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CDH6P55285 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CDH6P55285 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CDH6P55285 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC17.24■□□□□ 0.35
CDH6P55285 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC17.24■□□□□ 0.35
CDH6P55285 LINC01144-201ENST00000626198 1710 ntBASIC17.24■□□□□ 0.35
CDH6P55285 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CDH6P55285 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CDH6P55285 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC17.24■□□□□ 0.35
CDH6P55285 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CDH6P55285 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
CDH6P55285 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CDH6P55285 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CDH6P55285 BANP-204ENST00000393208 2283 ntTSL 2 BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms