Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.19
HOXA1P49639 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
HOXA1P49639 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC13.83□□□□□ -0.19
HOXA1P49639 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
HOXA1P49639 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
HOXA1P49639 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC13.83□□□□□ -0.2
HOXA1P49639 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC13.83□□□□□ -0.2
HOXA1P49639 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
HOXA1P49639 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
HOXA1P49639 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC13.83□□□□□ -0.2
HOXA1P49639 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC13.83□□□□□ -0.2
HOXA1P49639 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC13.83□□□□□ -0.2
HOXA1P49639 KRT18P57-201ENST00000443599 1254 ntBASIC13.83□□□□□ -0.2
HOXA1P49639 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC13.83□□□□□ -0.2
HOXA1P49639 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC13.83□□□□□ -0.2
HOXA1P49639 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC13.83□□□□□ -0.2
HOXA1P49639 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC13.83□□□□□ -0.2
HOXA1P49639 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC13.83□□□□□ -0.2
HOXA1P49639 WDR6-223ENST00000627177 207 ntTSL 2 BASIC13.83□□□□□ -0.2
HOXA1P49639 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
HOXA1P49639 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
HOXA1P49639 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC13.83□□□□□ -0.2
HOXA1P49639 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
HOXA1P49639 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC13.83□□□□□ -0.2
HOXA1P49639 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC13.83□□□□□ -0.2
HOXA1P49639 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
HOXA1P49639 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
HOXA1P49639 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
HOXA1P49639 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC13.83□□□□□ -0.2
HOXA1P49639 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC13.83□□□□□ -0.2
HOXA1P49639 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
HOXA1P49639 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC13.83□□□□□ -0.2
HOXA1P49639 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
HOXA1P49639 NID2-208ENST00000617139 3827 ntTSL 5 BASIC13.83□□□□□ -0.2
HOXA1P49639 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
HOXA1P49639 WLS-201ENST00000262348 2748 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
HOXA1P49639 PID1-202ENST00000392054 2745 ntTSL 2 BASIC13.83□□□□□ -0.2
HOXA1P49639 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
HOXA1P49639 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC13.82□□□□□ -0.2
HOXA1P49639 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HOXA1P49639 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
HOXA1P49639 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
HOXA1P49639 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HOXA1P49639 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
HOXA1P49639 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
HOXA1P49639 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC13.82□□□□□ -0.2
HOXA1P49639 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HOXA1P49639 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC13.82□□□□□ -0.2
HOXA1P49639 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HOXA1P49639 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HOXA1P49639 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
HOXA1P49639 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HOXA1P49639 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC13.82□□□□□ -0.2
HOXA1P49639 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC13.82□□□□□ -0.2
HOXA1P49639 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC13.82□□□□□ -0.2
HOXA1P49639 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
HOXA1P49639 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
HOXA1P49639 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HOXA1P49639 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
HOXA1P49639 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC13.82□□□□□ -0.2
HOXA1P49639 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
HOXA1P49639 FAM220CP-201ENST00000395253 831 ntBASIC13.82□□□□□ -0.2
HOXA1P49639 AK4P3-201ENST00000418260 669 ntBASIC13.82□□□□□ -0.2
HOXA1P49639 AC103564.2-201ENST00000432853 1299 ntBASIC13.82□□□□□ -0.2
HOXA1P49639 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
HOXA1P49639 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HOXA1P49639 AC122714.2-201ENST00000502787 707 ntBASIC13.82□□□□□ -0.2
HOXA1P49639 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC13.82□□□□□ -0.2
HOXA1P49639 TK2-213ENST00000563369 882 ntTSL 5 BASIC13.82□□□□□ -0.2
HOXA1P49639 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC13.82□□□□□ -0.2
HOXA1P49639 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
HOXA1P49639 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC13.82□□□□□ -0.2
HOXA1P49639 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC13.82□□□□□ -0.2
HOXA1P49639 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
HOXA1P49639 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC13.82□□□□□ -0.2
HOXA1P49639 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
HOXA1P49639 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HOXA1P49639 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC13.82□□□□□ -0.2
HOXA1P49639 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
HOXA1P49639 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HOXA1P49639 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
HOXA1P49639 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC13.82□□□□□ -0.2
HOXA1P49639 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
HOXA1P49639 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HOXA1P49639 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HOXA1P49639 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC13.82□□□□□ -0.2
HOXA1P49639 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC13.82□□□□□ -0.2
HOXA1P49639 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
HOXA1P49639 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC13.82□□□□□ -0.2
HOXA1P49639 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC13.82□□□□□ -0.2
HOXA1P49639 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HOXA1P49639 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC13.82□□□□□ -0.2
HOXA1P49639 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
HOXA1P49639 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
HOXA1P49639 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
HOXA1P49639 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
HOXA1P49639 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
HOXA1P49639 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
HOXA1P49639 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
HOXA1P49639 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms