Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
SOX3P41225 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC15.64■□□□□ 0.09
SOX3P41225 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC15.64■□□□□ 0.09
SOX3P41225 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC15.64■□□□□ 0.09
SOX3P41225 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
SOX3P41225 PDPK2P-202ENST00000562415 1191 ntBASIC15.64■□□□□ 0.09
SOX3P41225 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SOX3P41225 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC15.64■□□□□ 0.09
SOX3P41225 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC15.64■□□□□ 0.09
SOX3P41225 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC15.64■□□□□ 0.09
SOX3P41225 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC15.64■□□□□ 0.09
SOX3P41225 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
SOX3P41225 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
SOX3P41225 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC15.64■□□□□ 0.09
SOX3P41225 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SOX3P41225 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC15.64■□□□□ 0.09
SOX3P41225 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SOX3P41225 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SOX3P41225 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SOX3P41225 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC15.64■□□□□ 0.09
SOX3P41225 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SOX3P41225 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
SOX3P41225 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC15.64■□□□□ 0.09
SOX3P41225 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC15.64■□□□□ 0.09
SOX3P41225 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC15.63■□□□□ 0.09
SOX3P41225 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
SOX3P41225 FRMD8P1-201ENST00000440433 1524 ntBASIC15.63■□□□□ 0.09
SOX3P41225 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC15.63■□□□□ 0.09
SOX3P41225 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
SOX3P41225 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC15.63■□□□□ 0.09
SOX3P41225 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SOX3P41225 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC15.63■□□□□ 0.09
SOX3P41225 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
SOX3P41225 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC15.63■□□□□ 0.09
SOX3P41225 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SOX3P41225 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC15.63■□□□□ 0.09
SOX3P41225 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
SOX3P41225 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC15.63■□□□□ 0.09
SOX3P41225 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
SOX3P41225 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SOX3P41225 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC15.63■□□□□ 0.09
SOX3P41225 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC15.63■□□□□ 0.09
SOX3P41225 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
SOX3P41225 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
SOX3P41225 RPSAP43-201ENST00000402237 625 ntBASIC15.63■□□□□ 0.09
SOX3P41225 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC15.63■□□□□ 0.09
SOX3P41225 FIS1-203ENST00000442303 631 ntTSL 3 BASIC15.63■□□□□ 0.09
SOX3P41225 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC15.63■□□□□ 0.09
SOX3P41225 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC15.63■□□□□ 0.09
SOX3P41225 MIR3687-2-201ENST00000577708 61 ntBASIC15.63■□□□□ 0.09
SOX3P41225 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC15.63■□□□□ 0.09
SOX3P41225 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
SOX3P41225 MIR3687-1-201ENST00000614492 61 ntBASIC15.63■□□□□ 0.09
SOX3P41225 AC139530.3-201ENST00000620344 690 ntBASIC15.63■□□□□ 0.09
SOX3P41225 REXO1L3P-201ENST00000622202 1288 ntBASIC15.63■□□□□ 0.09
SOX3P41225 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SOX3P41225 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC15.63■□□□□ 0.09
SOX3P41225 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
SOX3P41225 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC15.63■□□□□ 0.09
SOX3P41225 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SOX3P41225 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SOX3P41225 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
SOX3P41225 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SOX3P41225 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
SOX3P41225 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
SOX3P41225 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC15.63■□□□□ 0.09
SOX3P41225 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC15.63■□□□□ 0.09
SOX3P41225 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
SOX3P41225 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC15.63■□□□□ 0.09
SOX3P41225 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
SOX3P41225 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC15.63■□□□□ 0.09
SOX3P41225 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC15.63■□□□□ 0.09
SOX3P41225 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
SOX3P41225 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC15.63■□□□□ 0.09
SOX3P41225 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC15.62■□□□□ 0.09
SOX3P41225 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
SOX3P41225 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
SOX3P41225 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
SOX3P41225 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SOX3P41225 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC15.62■□□□□ 0.09
SOX3P41225 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
SOX3P41225 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
SOX3P41225 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
SOX3P41225 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SOX3P41225 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SOX3P41225 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
SOX3P41225 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
SOX3P41225 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SOX3P41225 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
SOX3P41225 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SOX3P41225 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SOX3P41225 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SOX3P41225 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC15.62■□□□□ 0.09
SOX3P41225 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC15.62■□□□□ 0.09
SOX3P41225 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC15.62■□□□□ 0.09
SOX3P41225 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
SOX3P41225 AC112482.1-201ENST00000492080 688 ntBASIC15.62■□□□□ 0.09
SOX3P41225 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC15.62■□□□□ 0.09
SOX3P41225 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC15.62■□□□□ 0.09
SOX3P41225 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC15.62■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms