Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
APOEP02649 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
APOEP02649 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC17.38■□□□□ 0.37
APOEP02649 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
APOEP02649 SLC9A3P2-201ENST00000447821 2021 ntBASIC17.38■□□□□ 0.37
APOEP02649 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC17.38■□□□□ 0.37
APOEP02649 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
APOEP02649 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
APOEP02649 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
APOEP02649 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
APOEP02649 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
APOEP02649 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
APOEP02649 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC17.38■□□□□ 0.37
APOEP02649 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
APOEP02649 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC17.37■□□□□ 0.37
APOEP02649 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
APOEP02649 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
APOEP02649 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
APOEP02649 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
APOEP02649 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
APOEP02649 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC17.37■□□□□ 0.37
APOEP02649 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
APOEP02649 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
APOEP02649 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
APOEP02649 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC17.37■□□□□ 0.37
APOEP02649 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC17.37■□□□□ 0.37
APOEP02649 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
APOEP02649 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
APOEP02649 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
APOEP02649 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
APOEP02649 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC17.37■□□□□ 0.37
APOEP02649 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC17.37■□□□□ 0.37
APOEP02649 AC112482.1-201ENST00000492080 688 ntBASIC17.37■□□□□ 0.37
APOEP02649 MIR3909-201ENST00000579518 119 ntBASIC17.37■□□□□ 0.37
APOEP02649 AL009183.1-201ENST00000603760 355 ntBASIC17.37■□□□□ 0.37
APOEP02649 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
APOEP02649 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
APOEP02649 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
APOEP02649 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
APOEP02649 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
APOEP02649 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC17.36■□□□□ 0.37
APOEP02649 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
APOEP02649 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
APOEP02649 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
APOEP02649 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
APOEP02649 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
APOEP02649 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
APOEP02649 PMS2P4-201ENST00000412466 1052 ntBASIC17.36■□□□□ 0.37
APOEP02649 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
APOEP02649 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
APOEP02649 ACTG1P14-201ENST00000446382 1122 ntBASIC17.36■□□□□ 0.37
APOEP02649 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
APOEP02649 DHDH-204ENST00000523250 634 ntTSL 5 BASIC17.36■□□□□ 0.37
APOEP02649 AC109635.5-201ENST00000533593 962 ntBASIC17.36■□□□□ 0.37
APOEP02649 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC17.36■□□□□ 0.37
APOEP02649 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
APOEP02649 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
APOEP02649 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC17.36■□□□□ 0.37
APOEP02649 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
APOEP02649 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
APOEP02649 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
APOEP02649 AL645728.1-201ENST00000366221 2101 ntBASIC17.36■□□□□ 0.37
APOEP02649 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
APOEP02649 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
APOEP02649 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
APOEP02649 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
APOEP02649 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC17.36■□□□□ 0.37
APOEP02649 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
APOEP02649 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
APOEP02649 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC17.35■□□□□ 0.37
APOEP02649 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
APOEP02649 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
APOEP02649 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC17.35■□□□□ 0.37
APOEP02649 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
APOEP02649 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
APOEP02649 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
APOEP02649 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
APOEP02649 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
APOEP02649 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
APOEP02649 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
APOEP02649 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
APOEP02649 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
APOEP02649 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC17.35■□□□□ 0.37
APOEP02649 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
APOEP02649 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
APOEP02649 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
APOEP02649 CD82-202ENST00000342935 967 ntTSL 5 BASIC17.35■□□□□ 0.37
APOEP02649 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
APOEP02649 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
APOEP02649 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
APOEP02649 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC17.35■□□□□ 0.37
APOEP02649 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
APOEP02649 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC17.35■□□□□ 0.37
APOEP02649 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
APOEP02649 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC17.35■□□□□ 0.37
APOEP02649 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
APOEP02649 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
APOEP02649 CITED2-204ENST00000618718 901 ntTSL 2 BASIC17.35■□□□□ 0.37
APOEP02649 AL161645.1-201ENST00000622716 1255 ntBASIC17.35■□□□□ 0.37
APOEP02649 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC17.35■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms