Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC22.85■■□□□ 1.25
NPHP4O75161 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC22.85■■□□□ 1.25
NPHP4O75161 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
NPHP4O75161 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC22.85■■□□□ 1.25
NPHP4O75161 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC22.85■■□□□ 1.25
NPHP4O75161 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
NPHP4O75161 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC22.85■■□□□ 1.25
NPHP4O75161 EEF1DP4-201ENST00000446006 880 ntBASIC22.85■■□□□ 1.25
NPHP4O75161 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC22.85■■□□□ 1.25
NPHP4O75161 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
NPHP4O75161 ADM-202ENST00000524948 584 ntTSL 2 BASIC22.85■■□□□ 1.25
NPHP4O75161 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC22.85■■□□□ 1.25
NPHP4O75161 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC22.85■■□□□ 1.25
NPHP4O75161 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC22.85■■□□□ 1.25
NPHP4O75161 AL139011.1-202ENST00000642063 584 ntBASIC22.85■■□□□ 1.25
NPHP4O75161 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC22.85■■□□□ 1.25
NPHP4O75161 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
NPHP4O75161 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
NPHP4O75161 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC22.85■■□□□ 1.25
NPHP4O75161 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC22.85■■□□□ 1.25
NPHP4O75161 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC22.85■■□□□ 1.25
NPHP4O75161 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
NPHP4O75161 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC22.85■■□□□ 1.25
NPHP4O75161 USE1-206ENST00000595101 1776 ntTSL 2 BASIC22.85■■□□□ 1.25
NPHP4O75161 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
NPHP4O75161 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
NPHP4O75161 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC22.85■■□□□ 1.25
NPHP4O75161 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC22.85■■□□□ 1.25
NPHP4O75161 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
NPHP4O75161 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC22.85■■□□□ 1.25
NPHP4O75161 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC22.85■■□□□ 1.25
NPHP4O75161 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC22.85■■□□□ 1.25
NPHP4O75161 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC22.85■■□□□ 1.25
NPHP4O75161 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
NPHP4O75161 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC22.84■■□□□ 1.25
NPHP4O75161 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC22.84■■□□□ 1.25
NPHP4O75161 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC22.84■■□□□ 1.25
NPHP4O75161 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC22.84■■□□□ 1.25
NPHP4O75161 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
NPHP4O75161 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC22.84■■□□□ 1.25
NPHP4O75161 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
NPHP4O75161 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC22.84■■□□□ 1.25
NPHP4O75161 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC22.84■■□□□ 1.25
NPHP4O75161 AC253536.4-201ENST00000440539 267 ntBASIC22.84■■□□□ 1.25
NPHP4O75161 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC22.84■■□□□ 1.25
NPHP4O75161 LDHBP1-201ENST00000455730 1119 ntBASIC22.84■■□□□ 1.25
NPHP4O75161 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC22.84■■□□□ 1.25
NPHP4O75161 HIST2H2BC-201ENST00000498492 580 ntBASIC22.84■■□□□ 1.25
NPHP4O75161 LARP4-220ENST00000615080 856 ntTSL 5 BASIC22.84■■□□□ 1.25
NPHP4O75161 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC22.84■■□□□ 1.25
NPHP4O75161 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC22.84■■□□□ 1.25
NPHP4O75161 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
NPHP4O75161 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
NPHP4O75161 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC22.84■■□□□ 1.25
NPHP4O75161 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
NPHP4O75161 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC22.84■■□□□ 1.25
NPHP4O75161 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC22.84■■□□□ 1.25
NPHP4O75161 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC22.84■■□□□ 1.25
NPHP4O75161 KRT8P19-201ENST00000551916 1455 ntBASIC22.84■■□□□ 1.25
NPHP4O75161 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
NPHP4O75161 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
NPHP4O75161 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC22.84■■□□□ 1.25
NPHP4O75161 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC22.84■■□□□ 1.25
NPHP4O75161 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
NPHP4O75161 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC22.84■■□□□ 1.25
NPHP4O75161 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
NPHP4O75161 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
NPHP4O75161 LINC02012-201ENST00000608206 1725 ntBASIC22.84■■□□□ 1.25
NPHP4O75161 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
NPHP4O75161 AL662890.1-201ENST00000396818 632 ntBASIC22.83■■□□□ 1.25
NPHP4O75161 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC22.83■■□□□ 1.25
NPHP4O75161 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC22.83■■□□□ 1.25
NPHP4O75161 AC005077.2-201ENST00000449786 690 ntBASIC22.83■■□□□ 1.25
NPHP4O75161 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC22.83■■□□□ 1.25
NPHP4O75161 BX284668.4-201ENST00000453917 508 ntBASIC22.83■■□□□ 1.25
NPHP4O75161 RPL13AP25-201ENST00000484130 612 ntBASIC22.83■■□□□ 1.25
NPHP4O75161 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC22.83■■□□□ 1.25
NPHP4O75161 RERG-205ENST00000537647 935 ntTSL 2 BASIC22.83■■□□□ 1.25
NPHP4O75161 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC22.83■■□□□ 1.25
NPHP4O75161 AP006547.1-201ENST00000563435 692 ntBASIC22.83■■□□□ 1.25
NPHP4O75161 AP001063.1-201ENST00000568332 529 ntBASIC22.83■■□□□ 1.25
NPHP4O75161 AC008736.2-201ENST00000587554 516 ntTSL 2 BASIC22.83■■□□□ 1.25
NPHP4O75161 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC22.83■■□□□ 1.25
NPHP4O75161 METTL26-214ENST00000614890 801 ntTSL 3 BASIC22.83■■□□□ 1.25
NPHP4O75161 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC22.83■■□□□ 1.25
NPHP4O75161 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
NPHP4O75161 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
NPHP4O75161 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
NPHP4O75161 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
NPHP4O75161 AL354751.1-201ENST00000412768 1863 ntBASIC22.83■■□□□ 1.24
NPHP4O75161 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC22.83■■□□□ 1.24
NPHP4O75161 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC22.83■■□□□ 1.24
NPHP4O75161 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC22.83■■□□□ 1.24
NPHP4O75161 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.24
NPHP4O75161 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC22.83■■□□□ 1.24
NPHP4O75161 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC22.83■■□□□ 1.24
NPHP4O75161 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC22.83■■□□□ 1.24
NPHP4O75161 AZGP1P1-201ENST00000411909 902 ntBASIC22.82■■□□□ 1.24
NPHP4O75161 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC22.82■■□□□ 1.24
NPHP4O75161 REEP1-202ENST00000453231 940 ntTSL 2 BASIC22.82■■□□□ 1.24
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms