Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SHOX2O60902 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC16.61■□□□□ 0.25
SHOX2O60902 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
SHOX2O60902 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
SHOX2O60902 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC16.61■□□□□ 0.25
SHOX2O60902 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
SHOX2O60902 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC16.61■□□□□ 0.25
SHOX2O60902 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SHOX2O60902 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
SHOX2O60902 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SHOX2O60902 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SHOX2O60902 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SHOX2O60902 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SHOX2O60902 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC16.6■□□□□ 0.25
SHOX2O60902 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
SHOX2O60902 AC112693.3-201ENST00000624819 1983 ntBASIC16.6■□□□□ 0.25
SHOX2O60902 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SHOX2O60902 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SHOX2O60902 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SHOX2O60902 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC16.6■□□□□ 0.25
SHOX2O60902 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC16.6■□□□□ 0.25
SHOX2O60902 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SHOX2O60902 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC16.6■□□□□ 0.25
SHOX2O60902 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
SHOX2O60902 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
SHOX2O60902 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
SHOX2O60902 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
SHOX2O60902 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC16.6■□□□□ 0.25
SHOX2O60902 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
SHOX2O60902 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SHOX2O60902 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SHOX2O60902 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SHOX2O60902 MIR718-201ENST00000390190 70 ntBASIC16.6■□□□□ 0.25
SHOX2O60902 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC16.6■□□□□ 0.25
SHOX2O60902 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC16.6■□□□□ 0.25
SHOX2O60902 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC16.6■□□□□ 0.25
SHOX2O60902 AP003733.1-201ENST00000491725 852 ntBASIC16.6■□□□□ 0.25
SHOX2O60902 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC16.6■□□□□ 0.25
SHOX2O60902 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
SHOX2O60902 AC010654.1-201ENST00000615722 808 ntBASIC16.6■□□□□ 0.25
SHOX2O60902 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC16.6■□□□□ 0.25
SHOX2O60902 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC16.6■□□□□ 0.25
SHOX2O60902 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
SHOX2O60902 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SHOX2O60902 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SHOX2O60902 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
SHOX2O60902 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC16.6■□□□□ 0.25
SHOX2O60902 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC16.6■□□□□ 0.25
SHOX2O60902 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SHOX2O60902 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC16.6■□□□□ 0.25
SHOX2O60902 OS9-204ENST00000389146 2091 ntTSL 2 BASIC16.6■□□□□ 0.25
SHOX2O60902 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC16.6■□□□□ 0.25
SHOX2O60902 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
SHOX2O60902 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SHOX2O60902 HNRNPRP1-201ENST00000453465 1695 ntBASIC16.59■□□□□ 0.25
SHOX2O60902 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
SHOX2O60902 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC16.59■□□□□ 0.25
SHOX2O60902 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC16.59■□□□□ 0.25
SHOX2O60902 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SHOX2O60902 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
SHOX2O60902 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SHOX2O60902 AGAP7P-201ENST00000582299 2062 ntBASIC16.59■□□□□ 0.25
SHOX2O60902 AGAP14-201ENST00000624701 2060 ntBASIC16.59■□□□□ 0.25
SHOX2O60902 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
SHOX2O60902 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SHOX2O60902 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SHOX2O60902 TSPY14P-201ENST00000303979 915 ntBASIC16.59■□□□□ 0.25
SHOX2O60902 Telomerase-vert.1-201ENST00000363312 438 ntBASIC16.59■□□□□ 0.25
SHOX2O60902 KRT18P48-201ENST00000434763 852 ntBASIC16.59■□□□□ 0.25
SHOX2O60902 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC16.59■□□□□ 0.25
SHOX2O60902 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC16.59■□□□□ 0.25
SHOX2O60902 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SHOX2O60902 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
SHOX2O60902 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC16.59■□□□□ 0.25
SHOX2O60902 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SHOX2O60902 AC005252.3-201ENST00000623855 2258 ntBASIC16.59■□□□□ 0.25
SHOX2O60902 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
SHOX2O60902 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
SHOX2O60902 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
SHOX2O60902 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SHOX2O60902 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SHOX2O60902 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC16.59■□□□□ 0.25
SHOX2O60902 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC16.59■□□□□ 0.25
SHOX2O60902 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SHOX2O60902 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SHOX2O60902 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
SHOX2O60902 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SHOX2O60902 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
SHOX2O60902 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC16.59■□□□□ 0.25
SHOX2O60902 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC16.59■□□□□ 0.25
SHOX2O60902 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SHOX2O60902 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
SHOX2O60902 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC16.58■□□□□ 0.25
SHOX2O60902 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC16.58■□□□□ 0.25
SHOX2O60902 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
SHOX2O60902 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC16.58■□□□□ 0.25
SHOX2O60902 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC16.58■□□□□ 0.25
SHOX2O60902 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
SHOX2O60902 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
SHOX2O60902 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms