Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
HDAC3O15379 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
HDAC3O15379 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HDAC3O15379 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC16.17■□□□□ 0.18
HDAC3O15379 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
HDAC3O15379 MED16-201ENST00000269814 1199 ntTSL 5 BASIC16.17■□□□□ 0.18
HDAC3O15379 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
HDAC3O15379 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HDAC3O15379 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC16.17■□□□□ 0.18
HDAC3O15379 BX005266.1-201ENST00000473402 457 ntBASIC16.17■□□□□ 0.18
HDAC3O15379 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HDAC3O15379 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC16.17■□□□□ 0.18
HDAC3O15379 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HDAC3O15379 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC16.17■□□□□ 0.18
HDAC3O15379 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC16.17■□□□□ 0.18
HDAC3O15379 AL139424.1-201ENST00000607572 797 ntBASIC16.17■□□□□ 0.18
HDAC3O15379 AC010654.1-201ENST00000615722 808 ntBASIC16.17■□□□□ 0.18
HDAC3O15379 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC16.17■□□□□ 0.18
HDAC3O15379 REXO1L3P-201ENST00000622202 1288 ntBASIC16.17■□□□□ 0.18
HDAC3O15379 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
HDAC3O15379 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
HDAC3O15379 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC16.17■□□□□ 0.18
HDAC3O15379 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC16.17■□□□□ 0.18
HDAC3O15379 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HDAC3O15379 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HDAC3O15379 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HDAC3O15379 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
HDAC3O15379 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HDAC3O15379 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HDAC3O15379 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
HDAC3O15379 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC16.16■□□□□ 0.18
HDAC3O15379 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HDAC3O15379 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HDAC3O15379 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
HDAC3O15379 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC16.16■□□□□ 0.18
HDAC3O15379 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC16.16■□□□□ 0.18
HDAC3O15379 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
HDAC3O15379 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC16.16■□□□□ 0.18
HDAC3O15379 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HDAC3O15379 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC16.16■□□□□ 0.18
HDAC3O15379 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HDAC3O15379 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HDAC3O15379 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HDAC3O15379 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC16.16■□□□□ 0.18
HDAC3O15379 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HDAC3O15379 RCN1P1-201ENST00000400413 996 ntBASIC16.16■□□□□ 0.18
HDAC3O15379 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HDAC3O15379 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC16.16■□□□□ 0.18
HDAC3O15379 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC16.16■□□□□ 0.18
HDAC3O15379 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HDAC3O15379 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
HDAC3O15379 AL022326.1-202ENST00000641533 845 ntBASIC16.16■□□□□ 0.18
HDAC3O15379 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
HDAC3O15379 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HDAC3O15379 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HDAC3O15379 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HDAC3O15379 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HDAC3O15379 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HDAC3O15379 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HDAC3O15379 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HDAC3O15379 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HDAC3O15379 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
HDAC3O15379 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC16.16■□□□□ 0.18
HDAC3O15379 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
HDAC3O15379 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HDAC3O15379 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC16.16■□□□□ 0.18
HDAC3O15379 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC16.16■□□□□ 0.18
HDAC3O15379 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HDAC3O15379 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HDAC3O15379 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC16.15■□□□□ 0.18
HDAC3O15379 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HDAC3O15379 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HDAC3O15379 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
HDAC3O15379 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
HDAC3O15379 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
HDAC3O15379 AC023824.1-201ENST00000562945 2975 ntBASIC16.15■□□□□ 0.18
HDAC3O15379 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
HDAC3O15379 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HDAC3O15379 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC16.15■□□□□ 0.18
HDAC3O15379 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC16.15■□□□□ 0.18
HDAC3O15379 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC16.15■□□□□ 0.18
HDAC3O15379 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC16.15■□□□□ 0.18
HDAC3O15379 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HDAC3O15379 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HDAC3O15379 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC16.15■□□□□ 0.18
HDAC3O15379 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HDAC3O15379 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
HDAC3O15379 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
HDAC3O15379 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
HDAC3O15379 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HDAC3O15379 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
HDAC3O15379 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HDAC3O15379 WDR53-204ENST00000433160 887 ntTSL 5 BASIC16.15■□□□□ 0.18
HDAC3O15379 AC087163.2-201ENST00000457299 853 ntBASIC16.15■□□□□ 0.18
HDAC3O15379 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC16.15■□□□□ 0.18
HDAC3O15379 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HDAC3O15379 AC069224.1-201ENST00000566372 1715 ntBASIC16.15■□□□□ 0.18
HDAC3O15379 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
HDAC3O15379 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC16.15■□□□□ 0.18
HDAC3O15379 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC16.15■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms