Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SDCBPO00560 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SDCBPO00560 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SDCBPO00560 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SDCBPO00560 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
SDCBPO00560 AP005117.1-201ENST00000584346 1413 ntBASIC14.16□□□□□ -0.14
SDCBPO00560 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
SDCBPO00560 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC14.16□□□□□ -0.14
SDCBPO00560 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC14.16□□□□□ -0.14
SDCBPO00560 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SDCBPO00560 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC14.16□□□□□ -0.14
SDCBPO00560 LINC00895-201ENST00000629028 1637 ntBASIC14.16□□□□□ -0.14
SDCBPO00560 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
SDCBPO00560 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC14.16□□□□□ -0.14
SDCBPO00560 AC144831.1-201ENST00000573312 2656 ntBASIC14.16□□□□□ -0.14
SDCBPO00560 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
SDCBPO00560 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SDCBPO00560 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SDCBPO00560 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SDCBPO00560 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
SDCBPO00560 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
SDCBPO00560 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC14.16□□□□□ -0.14
SDCBPO00560 HLA-J-202ENST00000469281 1241 ntBASIC14.16□□□□□ -0.14
SDCBPO00560 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
SDCBPO00560 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC14.16□□□□□ -0.14
SDCBPO00560 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
SDCBPO00560 DUX4L17-201ENST00000557360 1267 ntBASIC14.16□□□□□ -0.14
SDCBPO00560 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC14.16□□□□□ -0.14
SDCBPO00560 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC14.16□□□□□ -0.14
SDCBPO00560 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SDCBPO00560 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
SDCBPO00560 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC14.16□□□□□ -0.14
SDCBPO00560 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SDCBPO00560 AL021920.2-201ENST00000624828 1351 ntBASIC14.16□□□□□ -0.14
SDCBPO00560 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC14.16□□□□□ -0.14
SDCBPO00560 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
SDCBPO00560 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
SDCBPO00560 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC14.16□□□□□ -0.14
SDCBPO00560 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SDCBPO00560 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
SDCBPO00560 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SDCBPO00560 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
SDCBPO00560 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC14.16□□□□□ -0.14
SDCBPO00560 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SDCBPO00560 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
SDCBPO00560 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
SDCBPO00560 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
SDCBPO00560 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
SDCBPO00560 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC14.16□□□□□ -0.14
SDCBPO00560 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
SDCBPO00560 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
SDCBPO00560 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
SDCBPO00560 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
SDCBPO00560 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SDCBPO00560 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC14.15□□□□□ -0.14
SDCBPO00560 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
SDCBPO00560 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SDCBPO00560 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
SDCBPO00560 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SDCBPO00560 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC14.15□□□□□ -0.14
SDCBPO00560 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC14.15□□□□□ -0.14
SDCBPO00560 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC14.15□□□□□ -0.14
SDCBPO00560 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SDCBPO00560 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SDCBPO00560 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
SDCBPO00560 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SDCBPO00560 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SDCBPO00560 AC010491.1-201ENST00000563101 2797 ntBASIC14.15□□□□□ -0.14
SDCBPO00560 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC14.15□□□□□ -0.14
SDCBPO00560 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SDCBPO00560 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SDCBPO00560 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SDCBPO00560 AL596087.1-201ENST00000400979 1969 ntBASIC14.15□□□□□ -0.14
SDCBPO00560 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SDCBPO00560 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
SDCBPO00560 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SDCBPO00560 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
SDCBPO00560 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SDCBPO00560 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SDCBPO00560 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SDCBPO00560 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC14.15□□□□□ -0.14
SDCBPO00560 BX005266.1-201ENST00000473402 457 ntBASIC14.15□□□□□ -0.14
SDCBPO00560 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
SDCBPO00560 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC14.15□□□□□ -0.14
SDCBPO00560 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC14.15□□□□□ -0.14
SDCBPO00560 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC14.15□□□□□ -0.14
SDCBPO00560 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC14.15□□□□□ -0.14
SDCBPO00560 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC14.15□□□□□ -0.14
SDCBPO00560 AC073592.4-201ENST00000623827 446 ntBASIC14.15□□□□□ -0.14
SDCBPO00560 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC14.15□□□□□ -0.14
SDCBPO00560 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SDCBPO00560 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SDCBPO00560 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
SDCBPO00560 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SDCBPO00560 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
SDCBPO00560 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SDCBPO00560 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SDCBPO00560 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SDCBPO00560 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SDCBPO00560 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms