Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC19.58■□□□□ 0.73
ZNF541Q9H0D2 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC19.58■□□□□ 0.73
ZNF541Q9H0D2 LINC01115-203ENST00000606068 577 ntBASIC19.58■□□□□ 0.73
ZNF541Q9H0D2 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC19.58■□□□□ 0.73
ZNF541Q9H0D2 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC19.58■□□□□ 0.73
ZNF541Q9H0D2 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
ZNF541Q9H0D2 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC19.58■□□□□ 0.73
ZNF541Q9H0D2 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
ZNF541Q9H0D2 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
ZNF541Q9H0D2 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC19.58■□□□□ 0.73
ZNF541Q9H0D2 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
ZNF541Q9H0D2 AC092053.1-201ENST00000605787 1936 ntBASIC19.58■□□□□ 0.72
ZNF541Q9H0D2 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC19.58■□□□□ 0.72
ZNF541Q9H0D2 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
ZNF541Q9H0D2 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
ZNF541Q9H0D2 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
ZNF541Q9H0D2 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
ZNF541Q9H0D2 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
ZNF541Q9H0D2 LOX-206ENST00000639739 1626 ntTSL 5 BASIC19.58■□□□□ 0.72
ZNF541Q9H0D2 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
ZNF541Q9H0D2 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
ZNF541Q9H0D2 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
ZNF541Q9H0D2 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
ZNF541Q9H0D2 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
ZNF541Q9H0D2 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
ZNF541Q9H0D2 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC19.57■□□□□ 0.72
ZNF541Q9H0D2 LINC02012-201ENST00000608206 1725 ntBASIC19.57■□□□□ 0.72
ZNF541Q9H0D2 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
ZNF541Q9H0D2 MGST3-203ENST00000367885 680 ntTSL 2 BASIC19.57■□□□□ 0.72
ZNF541Q9H0D2 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
ZNF541Q9H0D2 GPAA1P2-201ENST00000417923 928 ntBASIC19.57■□□□□ 0.72
ZNF541Q9H0D2 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC19.57■□□□□ 0.72
ZNF541Q9H0D2 RPL28-203ENST00000428193 573 ntTSL 2 BASIC19.57■□□□□ 0.72
ZNF541Q9H0D2 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
ZNF541Q9H0D2 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC19.57■□□□□ 0.72
ZNF541Q9H0D2 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC19.57■□□□□ 0.72
ZNF541Q9H0D2 AC124947.2-201ENST00000547118 1133 ntBASIC19.57■□□□□ 0.72
ZNF541Q9H0D2 SUOX-214ENST00000551841 906 ntTSL 3 BASIC19.57■□□□□ 0.72
ZNF541Q9H0D2 RPL28-207ENST00000558815 616 ntTSL 2 BASIC19.57■□□□□ 0.72
ZNF541Q9H0D2 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC19.57■□□□□ 0.72
ZNF541Q9H0D2 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC19.57■□□□□ 0.72
ZNF541Q9H0D2 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC19.57■□□□□ 0.72
ZNF541Q9H0D2 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC19.57■□□□□ 0.72
ZNF541Q9H0D2 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
ZNF541Q9H0D2 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
ZNF541Q9H0D2 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
ZNF541Q9H0D2 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
ZNF541Q9H0D2 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
ZNF541Q9H0D2 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
ZNF541Q9H0D2 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC19.57■□□□□ 0.72
ZNF541Q9H0D2 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
ZNF541Q9H0D2 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
ZNF541Q9H0D2 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC19.57■□□□□ 0.72
ZNF541Q9H0D2 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
ZNF541Q9H0D2 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
ZNF541Q9H0D2 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
ZNF541Q9H0D2 AC092506.1-202ENST00000401022 528 ntBASIC19.56■□□□□ 0.72
ZNF541Q9H0D2 AL442647.2-201ENST00000429864 857 ntBASIC19.56■□□□□ 0.72
ZNF541Q9H0D2 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC19.56■□□□□ 0.72
ZNF541Q9H0D2 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC19.56■□□□□ 0.72
ZNF541Q9H0D2 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
ZNF541Q9H0D2 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC19.56■□□□□ 0.72
ZNF541Q9H0D2 C2orf69P2-201ENST00000562032 1123 ntBASIC19.56■□□□□ 0.72
ZNF541Q9H0D2 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC19.56■□□□□ 0.72
ZNF541Q9H0D2 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC19.56■□□□□ 0.72
ZNF541Q9H0D2 AC020765.3-201ENST00000613051 740 ntBASIC19.56■□□□□ 0.72
ZNF541Q9H0D2 AC009542.2-202ENST00000619004 1067 ntBASIC19.56■□□□□ 0.72
ZNF541Q9H0D2 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC19.56■□□□□ 0.72
ZNF541Q9H0D2 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC19.56■□□□□ 0.72
ZNF541Q9H0D2 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC19.56■□□□□ 0.72
ZNF541Q9H0D2 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
ZNF541Q9H0D2 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
ZNF541Q9H0D2 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC19.56■□□□□ 0.72
ZNF541Q9H0D2 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
ZNF541Q9H0D2 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
ZNF541Q9H0D2 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC19.56■□□□□ 0.72
ZNF541Q9H0D2 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC19.56■□□□□ 0.72
ZNF541Q9H0D2 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
ZNF541Q9H0D2 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC19.56■□□□□ 0.72
ZNF541Q9H0D2 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
ZNF541Q9H0D2 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC19.55■□□□□ 0.72
ZNF541Q9H0D2 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
ZNF541Q9H0D2 RNF165-205ENST00000588679 2904 ntBASIC19.55■□□□□ 0.72
ZNF541Q9H0D2 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
ZNF541Q9H0D2 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
ZNF541Q9H0D2 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
ZNF541Q9H0D2 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
ZNF541Q9H0D2 ELK2AP-201ENST00000392510 1007 ntBASIC19.55■□□□□ 0.72
ZNF541Q9H0D2 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
ZNF541Q9H0D2 RNA5SP423-201ENST00000517127 109 ntBASIC19.55■□□□□ 0.72
ZNF541Q9H0D2 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC19.55■□□□□ 0.72
ZNF541Q9H0D2 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
ZNF541Q9H0D2 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
ZNF541Q9H0D2 AC036164.1-201ENST00000570544 333 ntBASIC19.55■□□□□ 0.72
ZNF541Q9H0D2 DERL2-202ENST00000570848 657 ntTSL 5 BASIC19.55■□□□□ 0.72
ZNF541Q9H0D2 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC19.55■□□□□ 0.72
ZNF541Q9H0D2 AC133539.2-201ENST00000604757 467 ntBASIC19.55■□□□□ 0.72
ZNF541Q9H0D2 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC19.55■□□□□ 0.72
ZNF541Q9H0D2 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
ZNF541Q9H0D2 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC19.55■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms