Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CHMP4AQ9BY43 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CHMP4AQ9BY43 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC21.07■□□□□ 0.96
CHMP4AQ9BY43 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC21.07■□□□□ 0.96
CHMP4AQ9BY43 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC21.07■□□□□ 0.96
CHMP4AQ9BY43 AL365330.1-201ENST00000607459 531 ntBASIC21.07■□□□□ 0.96
CHMP4AQ9BY43 AC018529.1-201ENST00000613063 361 ntBASIC21.07■□□□□ 0.96
CHMP4AQ9BY43 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC21.07■□□□□ 0.96
CHMP4AQ9BY43 AC093028.1-201ENST00000622998 982 ntBASIC21.07■□□□□ 0.96
CHMP4AQ9BY43 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CHMP4AQ9BY43 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC21.07■□□□□ 0.96
CHMP4AQ9BY43 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
CHMP4AQ9BY43 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CHMP4AQ9BY43 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CHMP4AQ9BY43 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC21.07■□□□□ 0.96
CHMP4AQ9BY43 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
CHMP4AQ9BY43 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CHMP4AQ9BY43 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
CHMP4AQ9BY43 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
CHMP4AQ9BY43 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CHMP4AQ9BY43 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
CHMP4AQ9BY43 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC21.06■□□□□ 0.96
CHMP4AQ9BY43 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
CHMP4AQ9BY43 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CHMP4AQ9BY43 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
CHMP4AQ9BY43 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CHMP4AQ9BY43 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CHMP4AQ9BY43 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
CHMP4AQ9BY43 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
CHMP4AQ9BY43 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CHMP4AQ9BY43 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CHMP4AQ9BY43 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC21.06■□□□□ 0.96
CHMP4AQ9BY43 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC21.06■□□□□ 0.96
CHMP4AQ9BY43 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC21.06■□□□□ 0.96
CHMP4AQ9BY43 VPS29-207ENST00000549970 818 ntTSL 3 BASIC21.06■□□□□ 0.96
CHMP4AQ9BY43 AC027796.2-201ENST00000575326 344 ntBASIC21.06■□□□□ 0.96
CHMP4AQ9BY43 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CHMP4AQ9BY43 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC21.06■□□□□ 0.96
CHMP4AQ9BY43 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
CHMP4AQ9BY43 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CHMP4AQ9BY43 AL035456.1-201ENST00000456064 1369 ntBASIC21.06■□□□□ 0.96
CHMP4AQ9BY43 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CHMP4AQ9BY43 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CHMP4AQ9BY43 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CHMP4AQ9BY43 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CHMP4AQ9BY43 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC21.06■□□□□ 0.96
CHMP4AQ9BY43 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CHMP4AQ9BY43 TUBB3P1-201ENST00000405796 1332 ntBASIC21.05■□□□□ 0.96
CHMP4AQ9BY43 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
CHMP4AQ9BY43 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CHMP4AQ9BY43 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
CHMP4AQ9BY43 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CHMP4AQ9BY43 AL589702.1-201ENST00000641229 1509 ntBASIC21.05■□□□□ 0.96
CHMP4AQ9BY43 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CHMP4AQ9BY43 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CHMP4AQ9BY43 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
CHMP4AQ9BY43 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CHMP4AQ9BY43 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
CHMP4AQ9BY43 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
CHMP4AQ9BY43 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
CHMP4AQ9BY43 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CHMP4AQ9BY43 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CHMP4AQ9BY43 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CHMP4AQ9BY43 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
CHMP4AQ9BY43 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC21.05■□□□□ 0.96
CHMP4AQ9BY43 GRAMD4P3-201ENST00000621665 1669 ntBASIC21.05■□□□□ 0.96
CHMP4AQ9BY43 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
CHMP4AQ9BY43 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC21.05■□□□□ 0.96
CHMP4AQ9BY43 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CHMP4AQ9BY43 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
CHMP4AQ9BY43 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CHMP4AQ9BY43 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CHMP4AQ9BY43 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CHMP4AQ9BY43 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CHMP4AQ9BY43 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CHMP4AQ9BY43 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
CHMP4AQ9BY43 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC21.04■□□□□ 0.96
CHMP4AQ9BY43 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CHMP4AQ9BY43 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CHMP4AQ9BY43 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
CHMP4AQ9BY43 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
CHMP4AQ9BY43 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CHMP4AQ9BY43 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CHMP4AQ9BY43 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CHMP4AQ9BY43 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC21.04■□□□□ 0.96
CHMP4AQ9BY43 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC21.04■□□□□ 0.96
CHMP4AQ9BY43 AL353705.2-201ENST00000428243 662 ntBASIC21.04■□□□□ 0.96
CHMP4AQ9BY43 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC21.04■□□□□ 0.96
CHMP4AQ9BY43 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC21.04■□□□□ 0.96
CHMP4AQ9BY43 CYMP-203ENST00000474680 1263 ntBASIC21.04■□□□□ 0.96
CHMP4AQ9BY43 AC051619.7-201ENST00000568314 623 ntBASIC21.04■□□□□ 0.96
CHMP4AQ9BY43 Z92544.3-201ENST00000624747 417 ntBASIC21.04■□□□□ 0.96
CHMP4AQ9BY43 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
CHMP4AQ9BY43 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC21.04■□□□□ 0.96
CHMP4AQ9BY43 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC21.04■□□□□ 0.96
CHMP4AQ9BY43 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC21.04■□□□□ 0.96
CHMP4AQ9BY43 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC21.04■□□□□ 0.96
CHMP4AQ9BY43 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
CHMP4AQ9BY43 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC21.04■□□□□ 0.96
CHMP4AQ9BY43 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC21.04■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms