Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
COL25A1Q9BXS0 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC16.44■□□□□ 0.22
COL25A1Q9BXS0 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC16.44■□□□□ 0.22
COL25A1Q9BXS0 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
COL25A1Q9BXS0 AC022137.2-201ENST00000503482 481 ntBASIC16.44■□□□□ 0.22
COL25A1Q9BXS0 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
COL25A1Q9BXS0 IGLV3-15-201ENST00000518356 244 ntBASIC16.44■□□□□ 0.22
COL25A1Q9BXS0 IGHV3-37-201ENST00000518544 340 ntBASIC16.44■□□□□ 0.22
COL25A1Q9BXS0 AC022217.1-201ENST00000521069 738 ntBASIC16.44■□□□□ 0.22
COL25A1Q9BXS0 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
COL25A1Q9BXS0 ANAPC15-217ENST00000545944 704 ntAPPRIS P3 TSL 3 BASIC16.44■□□□□ 0.22
COL25A1Q9BXS0 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC16.44■□□□□ 0.22
COL25A1Q9BXS0 AL118516.1-201ENST00000564152 670 ntBASIC16.44■□□□□ 0.22
COL25A1Q9BXS0 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
COL25A1Q9BXS0 AL645939.5-201ENST00000606834 243 ntBASIC16.44■□□□□ 0.22
COL25A1Q9BXS0 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC16.44■□□□□ 0.22
COL25A1Q9BXS0 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL25A1Q9BXS0 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC16.44■□□□□ 0.22
COL25A1Q9BXS0 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL25A1Q9BXS0 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC16.44■□□□□ 0.22
COL25A1Q9BXS0 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL25A1Q9BXS0 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL25A1Q9BXS0 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
COL25A1Q9BXS0 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL25A1Q9BXS0 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL25A1Q9BXS0 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
COL25A1Q9BXS0 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC16.43■□□□□ 0.22
COL25A1Q9BXS0 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL25A1Q9BXS0 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL25A1Q9BXS0 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL25A1Q9BXS0 STX6-204ENST00000542060 4809 ntTSL 2 BASIC16.43■□□□□ 0.22
COL25A1Q9BXS0 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL25A1Q9BXS0 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
COL25A1Q9BXS0 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL25A1Q9BXS0 FAM27E5-201ENST00000426869 682 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
COL25A1Q9BXS0 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC16.43■□□□□ 0.22
COL25A1Q9BXS0 HIST3H2BA-201ENST00000436555 524 ntBASIC16.43■□□□□ 0.22
COL25A1Q9BXS0 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC16.43■□□□□ 0.22
COL25A1Q9BXS0 AL139010.1-201ENST00000454878 894 ntBASIC16.43■□□□□ 0.22
COL25A1Q9BXS0 RPL18P13-201ENST00000478088 569 ntBASIC16.43■□□□□ 0.22
COL25A1Q9BXS0 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC16.43■□□□□ 0.22
COL25A1Q9BXS0 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC16.43■□□□□ 0.22
COL25A1Q9BXS0 TVP23C-205ENST00000518321 1080 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL25A1Q9BXS0 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
COL25A1Q9BXS0 DNAJB13-203ENST00000537753 912 ntTSL 3 BASIC16.43■□□□□ 0.22
COL25A1Q9BXS0 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC16.43■□□□□ 0.22
COL25A1Q9BXS0 FAM227B-210ENST00000560246 911 ntAPPRIS ALT2 TSL 3 BASIC16.43■□□□□ 0.22
COL25A1Q9BXS0 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC16.43■□□□□ 0.22
COL25A1Q9BXS0 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
COL25A1Q9BXS0 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC16.43■□□□□ 0.22
COL25A1Q9BXS0 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL25A1Q9BXS0 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
COL25A1Q9BXS0 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC16.43■□□□□ 0.22
COL25A1Q9BXS0 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
COL25A1Q9BXS0 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC16.43■□□□□ 0.22
COL25A1Q9BXS0 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL25A1Q9BXS0 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
COL25A1Q9BXS0 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC16.43■□□□□ 0.22
COL25A1Q9BXS0 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
COL25A1Q9BXS0 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC16.43■□□□□ 0.22
COL25A1Q9BXS0 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
COL25A1Q9BXS0 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
COL25A1Q9BXS0 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL25A1Q9BXS0 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL25A1Q9BXS0 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL25A1Q9BXS0 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
COL25A1Q9BXS0 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC16.42■□□□□ 0.22
COL25A1Q9BXS0 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
COL25A1Q9BXS0 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL25A1Q9BXS0 Z97205.2-201ENST00000564697 1639 ntBASIC16.42■□□□□ 0.22
COL25A1Q9BXS0 AL031598.1-201ENST00000561511 1773 ntBASIC16.42■□□□□ 0.22
COL25A1Q9BXS0 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC16.42■□□□□ 0.22
COL25A1Q9BXS0 GUK1-206ENST00000366723 845 ntTSL 5 BASIC16.42■□□□□ 0.22
COL25A1Q9BXS0 PKIG-203ENST00000372887 769 ntTSL 3 BASIC16.42■□□□□ 0.22
COL25A1Q9BXS0 FO393414.2-201ENST00000405153 598 ntBASIC16.42■□□□□ 0.22
COL25A1Q9BXS0 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
COL25A1Q9BXS0 NSUN5P1-203ENST00000422386 972 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
COL25A1Q9BXS0 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
COL25A1Q9BXS0 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL25A1Q9BXS0 AL138720.1-201ENST00000629853 778 ntTSL 5 BASIC16.42■□□□□ 0.22
COL25A1Q9BXS0 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
COL25A1Q9BXS0 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
COL25A1Q9BXS0 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
COL25A1Q9BXS0 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC16.42■□□□□ 0.22
COL25A1Q9BXS0 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC16.42■□□□□ 0.22
COL25A1Q9BXS0 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL25A1Q9BXS0 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
COL25A1Q9BXS0 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
COL25A1Q9BXS0 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL25A1Q9BXS0 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL25A1Q9BXS0 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL25A1Q9BXS0 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL25A1Q9BXS0 CROCCP3-202ENST00000420820 1947 ntBASIC16.41■□□□□ 0.22
COL25A1Q9BXS0 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC16.41■□□□□ 0.22
COL25A1Q9BXS0 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL25A1Q9BXS0 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL25A1Q9BXS0 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC16.41■□□□□ 0.22
COL25A1Q9BXS0 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
COL25A1Q9BXS0 TP73-209ENST00000603362 1668 ntTSL 5 BASIC16.41■□□□□ 0.22
COL25A1Q9BXS0 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC16.41■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 66.8 ms