Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC16.98■□□□□ 0.31
TRIM56Q9BRZ2 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
TRIM56Q9BRZ2 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TRIM56Q9BRZ2 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
TRIM56Q9BRZ2 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC16.98■□□□□ 0.31
TRIM56Q9BRZ2 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC16.98■□□□□ 0.31
TRIM56Q9BRZ2 SLC25A6P2-201ENST00000497974 877 ntBASIC16.98■□□□□ 0.31
TRIM56Q9BRZ2 AC139887.3-201ENST00000568585 713 ntBASIC16.98■□□□□ 0.31
TRIM56Q9BRZ2 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
TRIM56Q9BRZ2 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TRIM56Q9BRZ2 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
TRIM56Q9BRZ2 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC16.98■□□□□ 0.31
TRIM56Q9BRZ2 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
TRIM56Q9BRZ2 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC16.98■□□□□ 0.31
TRIM56Q9BRZ2 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
TRIM56Q9BRZ2 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC16.98■□□□□ 0.31
TRIM56Q9BRZ2 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
TRIM56Q9BRZ2 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
TRIM56Q9BRZ2 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC16.98■□□□□ 0.31
TRIM56Q9BRZ2 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TRIM56Q9BRZ2 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC16.98■□□□□ 0.31
TRIM56Q9BRZ2 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TRIM56Q9BRZ2 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
TRIM56Q9BRZ2 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
TRIM56Q9BRZ2 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TRIM56Q9BRZ2 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
TRIM56Q9BRZ2 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TRIM56Q9BRZ2 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
TRIM56Q9BRZ2 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TRIM56Q9BRZ2 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TRIM56Q9BRZ2 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
TRIM56Q9BRZ2 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
TRIM56Q9BRZ2 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
TRIM56Q9BRZ2 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
TRIM56Q9BRZ2 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
TRIM56Q9BRZ2 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
TRIM56Q9BRZ2 AL512652.2-201ENST00000625156 1716 ntBASIC16.97■□□□□ 0.31
TRIM56Q9BRZ2 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
TRIM56Q9BRZ2 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC16.97■□□□□ 0.31
TRIM56Q9BRZ2 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
TRIM56Q9BRZ2 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TRIM56Q9BRZ2 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
TRIM56Q9BRZ2 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
TRIM56Q9BRZ2 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC16.97■□□□□ 0.31
TRIM56Q9BRZ2 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC16.97■□□□□ 0.31
TRIM56Q9BRZ2 RN7SL510P-201ENST00000581311 263 ntBASIC16.97■□□□□ 0.31
TRIM56Q9BRZ2 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC16.97■□□□□ 0.31
TRIM56Q9BRZ2 AC013467.2-201ENST00000605472 835 ntBASIC16.97■□□□□ 0.31
TRIM56Q9BRZ2 IFNL4P1-201ENST00000607083 540 ntBASIC16.97■□□□□ 0.31
TRIM56Q9BRZ2 REXO1L3P-201ENST00000622202 1288 ntBASIC16.97■□□□□ 0.31
TRIM56Q9BRZ2 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
TRIM56Q9BRZ2 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC16.97■□□□□ 0.31
TRIM56Q9BRZ2 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
TRIM56Q9BRZ2 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
TRIM56Q9BRZ2 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC16.97■□□□□ 0.31
TRIM56Q9BRZ2 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC16.97■□□□□ 0.31
TRIM56Q9BRZ2 AC068587.6-202ENST00000641839 5619 ntBASIC16.97■□□□□ 0.31
TRIM56Q9BRZ2 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC16.97■□□□□ 0.31
TRIM56Q9BRZ2 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TRIM56Q9BRZ2 ABR-203ENST00000536794 2213 ntTSL 2 BASIC16.97■□□□□ 0.31
TRIM56Q9BRZ2 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TRIM56Q9BRZ2 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TRIM56Q9BRZ2 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
TRIM56Q9BRZ2 AC007950.2-201ENST00000615045 2347 ntBASIC16.97■□□□□ 0.31
TRIM56Q9BRZ2 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC16.97■□□□□ 0.31
TRIM56Q9BRZ2 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TRIM56Q9BRZ2 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC16.97■□□□□ 0.31
TRIM56Q9BRZ2 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC16.97■□□□□ 0.31
TRIM56Q9BRZ2 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
TRIM56Q9BRZ2 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
TRIM56Q9BRZ2 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
TRIM56Q9BRZ2 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
TRIM56Q9BRZ2 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
TRIM56Q9BRZ2 PI4KAP1-204ENST00000612579 1703 ntBASIC16.96■□□□□ 0.31
TRIM56Q9BRZ2 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
TRIM56Q9BRZ2 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
TRIM56Q9BRZ2 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC16.96■□□□□ 0.31
TRIM56Q9BRZ2 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
TRIM56Q9BRZ2 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC16.96■□□□□ 0.31
TRIM56Q9BRZ2 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
TRIM56Q9BRZ2 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
TRIM56Q9BRZ2 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC16.96■□□□□ 0.31
TRIM56Q9BRZ2 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC16.96■□□□□ 0.31
TRIM56Q9BRZ2 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC16.96■□□□□ 0.31
TRIM56Q9BRZ2 FAAHP1-202ENST00000446499 1238 ntBASIC16.96■□□□□ 0.31
TRIM56Q9BRZ2 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC16.96■□□□□ 0.31
TRIM56Q9BRZ2 SAPCD2P3-201ENST00000455031 850 ntBASIC16.96■□□□□ 0.31
TRIM56Q9BRZ2 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC16.96■□□□□ 0.31
TRIM56Q9BRZ2 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC16.96■□□□□ 0.31
TRIM56Q9BRZ2 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC16.96■□□□□ 0.31
TRIM56Q9BRZ2 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC16.96■□□□□ 0.31
TRIM56Q9BRZ2 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
TRIM56Q9BRZ2 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
TRIM56Q9BRZ2 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC16.96■□□□□ 0.31
TRIM56Q9BRZ2 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TRIM56Q9BRZ2 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC16.96■□□□□ 0.31
TRIM56Q9BRZ2 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC16.96■□□□□ 0.31
TRIM56Q9BRZ2 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
TRIM56Q9BRZ2 TOP3BP1-201ENST00000420768 1380 ntBASIC16.96■□□□□ 0.31
TRIM56Q9BRZ2 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC16.96■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms