Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC18.38■□□□□ 0.53
HPS3Q969F9 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC18.38■□□□□ 0.53
HPS3Q969F9 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC18.38■□□□□ 0.53
HPS3Q969F9 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC18.38■□□□□ 0.53
HPS3Q969F9 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC18.38■□□□□ 0.53
HPS3Q969F9 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC18.38■□□□□ 0.53
HPS3Q969F9 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC18.38■□□□□ 0.53
HPS3Q969F9 AC023141.13-201ENST00000604991 943 ntBASIC18.38■□□□□ 0.53
HPS3Q969F9 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC18.38■□□□□ 0.53
HPS3Q969F9 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
HPS3Q969F9 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HPS3Q969F9 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
HPS3Q969F9 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HPS3Q969F9 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC18.38■□□□□ 0.53
HPS3Q969F9 ZNF259P1-201ENST00000407656 1365 ntBASIC18.38■□□□□ 0.53
HPS3Q969F9 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
HPS3Q969F9 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
HPS3Q969F9 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC18.38■□□□□ 0.53
HPS3Q969F9 BANP-204ENST00000393208 2283 ntTSL 2 BASIC18.38■□□□□ 0.53
HPS3Q969F9 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
HPS3Q969F9 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HPS3Q969F9 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
HPS3Q969F9 AGK-211ENST00000629555 2765 ntTSL 5 BASIC18.37■□□□□ 0.53
HPS3Q969F9 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HPS3Q969F9 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC18.37■□□□□ 0.53
HPS3Q969F9 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
HPS3Q969F9 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HPS3Q969F9 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
HPS3Q969F9 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC18.37■□□□□ 0.53
HPS3Q969F9 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HPS3Q969F9 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HPS3Q969F9 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
HPS3Q969F9 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HPS3Q969F9 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
HPS3Q969F9 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HPS3Q969F9 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HPS3Q969F9 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
HPS3Q969F9 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
HPS3Q969F9 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
HPS3Q969F9 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC18.37■□□□□ 0.53
HPS3Q969F9 STARD13-205ENST00000439831 945 ntTSL 2 BASIC18.37■□□□□ 0.53
HPS3Q969F9 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
HPS3Q969F9 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
HPS3Q969F9 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC18.37■□□□□ 0.53
HPS3Q969F9 CD63-210ENST00000550776 870 ntTSL 5 BASIC18.37■□□□□ 0.53
HPS3Q969F9 CD7-202ENST00000578509 925 ntTSL 3 BASIC18.37■□□□□ 0.53
HPS3Q969F9 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
HPS3Q969F9 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC18.37■□□□□ 0.53
HPS3Q969F9 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HPS3Q969F9 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC18.37■□□□□ 0.53
HPS3Q969F9 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC18.37■□□□□ 0.53
HPS3Q969F9 REXO1L8P-201ENST00000604378 1897 ntBASIC18.37■□□□□ 0.53
HPS3Q969F9 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC18.37■□□□□ 0.53
HPS3Q969F9 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HPS3Q969F9 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
HPS3Q969F9 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC18.37■□□□□ 0.53
HPS3Q969F9 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
HPS3Q969F9 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
HPS3Q969F9 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
HPS3Q969F9 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HPS3Q969F9 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC18.36■□□□□ 0.53
HPS3Q969F9 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
HPS3Q969F9 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HPS3Q969F9 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HPS3Q969F9 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
HPS3Q969F9 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HPS3Q969F9 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HPS3Q969F9 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
HPS3Q969F9 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HPS3Q969F9 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
HPS3Q969F9 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC18.36■□□□□ 0.53
HPS3Q969F9 MED15P5-201ENST00000423150 992 ntBASIC18.36■□□□□ 0.53
HPS3Q969F9 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC18.36■□□□□ 0.53
HPS3Q969F9 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
HPS3Q969F9 KRT18P3-201ENST00000451602 1288 ntBASIC18.36■□□□□ 0.53
HPS3Q969F9 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
HPS3Q969F9 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
HPS3Q969F9 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC18.36■□□□□ 0.53
HPS3Q969F9 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HPS3Q969F9 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
HPS3Q969F9 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC18.36■□□□□ 0.53
HPS3Q969F9 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HPS3Q969F9 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
HPS3Q969F9 PGR-209ENST00000617858 2816 ntTSL 5 BASIC18.36■□□□□ 0.53
HPS3Q969F9 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HPS3Q969F9 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC18.36■□□□□ 0.53
HPS3Q969F9 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC18.36■□□□□ 0.53
HPS3Q969F9 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HPS3Q969F9 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
HPS3Q969F9 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC18.35■□□□□ 0.53
HPS3Q969F9 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
HPS3Q969F9 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
HPS3Q969F9 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
HPS3Q969F9 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC18.35■□□□□ 0.53
HPS3Q969F9 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC18.35■□□□□ 0.53
HPS3Q969F9 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
HPS3Q969F9 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC18.35■□□□□ 0.53
HPS3Q969F9 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HPS3Q969F9 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC18.35■□□□□ 0.53
HPS3Q969F9 AC132872.4-202ENST00000622924 2756 ntBASIC18.35■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms