Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC16.86■□□□□ 0.29
SHROOM3Q8TF72 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
SHROOM3Q8TF72 CYP2T1P-202ENST00000641596 2535 ntBASIC16.86■□□□□ 0.29
SHROOM3Q8TF72 AKAP8P1-201ENST00000434743 1349 ntBASIC16.86■□□□□ 0.29
SHROOM3Q8TF72 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SHROOM3Q8TF72 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SHROOM3Q8TF72 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC16.86■□□□□ 0.29
SHROOM3Q8TF72 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SHROOM3Q8TF72 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SHROOM3Q8TF72 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SHROOM3Q8TF72 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SHROOM3Q8TF72 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC16.86■□□□□ 0.29
SHROOM3Q8TF72 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
SHROOM3Q8TF72 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SHROOM3Q8TF72 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SHROOM3Q8TF72 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC16.86■□□□□ 0.29
SHROOM3Q8TF72 KLK8-202ENST00000320838 456 ntTSL 5 BASIC16.86■□□□□ 0.29
SHROOM3Q8TF72 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SHROOM3Q8TF72 CD82-202ENST00000342935 967 ntTSL 5 BASIC16.86■□□□□ 0.29
SHROOM3Q8TF72 FAM58CP-201ENST00000435741 640 ntBASIC16.86■□□□□ 0.29
SHROOM3Q8TF72 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC16.86■□□□□ 0.29
SHROOM3Q8TF72 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
SHROOM3Q8TF72 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SHROOM3Q8TF72 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC16.86■□□□□ 0.29
SHROOM3Q8TF72 PUS1-205ENST00000535067 838 ntTSL 3 BASIC16.86■□□□□ 0.29
SHROOM3Q8TF72 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SHROOM3Q8TF72 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
SHROOM3Q8TF72 AC020765.3-201ENST00000613051 740 ntBASIC16.86■□□□□ 0.29
SHROOM3Q8TF72 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SHROOM3Q8TF72 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC16.86■□□□□ 0.29
SHROOM3Q8TF72 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
SHROOM3Q8TF72 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC16.85■□□□□ 0.29
SHROOM3Q8TF72 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC16.85■□□□□ 0.29
SHROOM3Q8TF72 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
SHROOM3Q8TF72 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC16.85■□□□□ 0.29
SHROOM3Q8TF72 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC16.85■□□□□ 0.29
SHROOM3Q8TF72 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC16.85■□□□□ 0.29
SHROOM3Q8TF72 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SHROOM3Q8TF72 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SHROOM3Q8TF72 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SHROOM3Q8TF72 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC16.85■□□□□ 0.29
SHROOM3Q8TF72 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SHROOM3Q8TF72 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC16.85■□□□□ 0.29
SHROOM3Q8TF72 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC16.85■□□□□ 0.29
SHROOM3Q8TF72 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
SHROOM3Q8TF72 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
SHROOM3Q8TF72 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
SHROOM3Q8TF72 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC16.85■□□□□ 0.29
SHROOM3Q8TF72 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC16.85■□□□□ 0.29
SHROOM3Q8TF72 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC16.85■□□□□ 0.29
SHROOM3Q8TF72 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC16.85■□□□□ 0.29
SHROOM3Q8TF72 AC093724.1-201ENST00000448659 1027 ntBASIC16.85■□□□□ 0.29
SHROOM3Q8TF72 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC16.85■□□□□ 0.29
SHROOM3Q8TF72 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
SHROOM3Q8TF72 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC16.85■□□□□ 0.29
SHROOM3Q8TF72 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC16.85■□□□□ 0.29
SHROOM3Q8TF72 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC16.85■□□□□ 0.29
SHROOM3Q8TF72 RARRES2P8-201ENST00000566335 367 ntBASIC16.85■□□□□ 0.29
SHROOM3Q8TF72 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC16.85■□□□□ 0.29
SHROOM3Q8TF72 AC027612.4-201ENST00000605371 583 ntBASIC16.85■□□□□ 0.29
SHROOM3Q8TF72 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SHROOM3Q8TF72 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC16.85■□□□□ 0.29
SHROOM3Q8TF72 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SHROOM3Q8TF72 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
SHROOM3Q8TF72 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
SHROOM3Q8TF72 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SHROOM3Q8TF72 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC16.85■□□□□ 0.29
SHROOM3Q8TF72 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SHROOM3Q8TF72 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC16.85■□□□□ 0.29
SHROOM3Q8TF72 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
SHROOM3Q8TF72 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC16.85■□□□□ 0.29
SHROOM3Q8TF72 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SHROOM3Q8TF72 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
SHROOM3Q8TF72 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
SHROOM3Q8TF72 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SHROOM3Q8TF72 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
SHROOM3Q8TF72 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SHROOM3Q8TF72 MKNK2P1-201ENST00000437526 628 ntBASIC16.84■□□□□ 0.29
SHROOM3Q8TF72 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC16.84■□□□□ 0.29
SHROOM3Q8TF72 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SHROOM3Q8TF72 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC16.84■□□□□ 0.29
SHROOM3Q8TF72 RNF34-208ENST00000555076 593 ntTSL 3 BASIC16.84■□□□□ 0.29
SHROOM3Q8TF72 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC16.84■□□□□ 0.29
SHROOM3Q8TF72 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
SHROOM3Q8TF72 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC16.84■□□□□ 0.29
SHROOM3Q8TF72 AJ011932.1-201ENST00000621707 465 ntBASIC16.84■□□□□ 0.29
SHROOM3Q8TF72 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SHROOM3Q8TF72 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC16.84■□□□□ 0.29
SHROOM3Q8TF72 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SHROOM3Q8TF72 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SHROOM3Q8TF72 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
SHROOM3Q8TF72 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
SHROOM3Q8TF72 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
SHROOM3Q8TF72 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
SHROOM3Q8TF72 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC16.84■□□□□ 0.29
SHROOM3Q8TF72 AC006449.6-201ENST00000612330 2296 ntBASIC16.84■□□□□ 0.29
SHROOM3Q8TF72 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SHROOM3Q8TF72 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC16.84■□□□□ 0.29
SHROOM3Q8TF72 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
SHROOM3Q8TF72 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms