Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.32
NPAS3Q8IXF0 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC17.08■□□□□ 0.32
NPAS3Q8IXF0 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
NPAS3Q8IXF0 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
NPAS3Q8IXF0 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
NPAS3Q8IXF0 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
NPAS3Q8IXF0 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC17.08■□□□□ 0.32
NPAS3Q8IXF0 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC17.08■□□□□ 0.32
NPAS3Q8IXF0 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC17.08■□□□□ 0.32
NPAS3Q8IXF0 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC17.08■□□□□ 0.32
NPAS3Q8IXF0 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
NPAS3Q8IXF0 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
NPAS3Q8IXF0 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
NPAS3Q8IXF0 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
NPAS3Q8IXF0 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NPAS3Q8IXF0 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NPAS3Q8IXF0 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
NPAS3Q8IXF0 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NPAS3Q8IXF0 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC17.07■□□□□ 0.32
NPAS3Q8IXF0 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
NPAS3Q8IXF0 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
NPAS3Q8IXF0 BTBD7P1-201ENST00000447253 1453 ntBASIC17.07■□□□□ 0.32
NPAS3Q8IXF0 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC17.07■□□□□ 0.32
NPAS3Q8IXF0 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
NPAS3Q8IXF0 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NPAS3Q8IXF0 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC17.07■□□□□ 0.32
NPAS3Q8IXF0 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NPAS3Q8IXF0 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC17.07■□□□□ 0.32
NPAS3Q8IXF0 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NPAS3Q8IXF0 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC17.07■□□□□ 0.32
NPAS3Q8IXF0 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC17.07■□□□□ 0.32
NPAS3Q8IXF0 GNAQP1-201ENST00000444815 1067 ntBASIC17.07■□□□□ 0.32
NPAS3Q8IXF0 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC17.07■□□□□ 0.32
NPAS3Q8IXF0 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC17.07■□□□□ 0.32
NPAS3Q8IXF0 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC17.07■□□□□ 0.32
NPAS3Q8IXF0 AC092068.3-201ENST00000587894 2016 ntBASIC17.07■□□□□ 0.32
NPAS3Q8IXF0 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
NPAS3Q8IXF0 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NPAS3Q8IXF0 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC17.07■□□□□ 0.32
NPAS3Q8IXF0 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
NPAS3Q8IXF0 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
NPAS3Q8IXF0 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC17.07■□□□□ 0.32
NPAS3Q8IXF0 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
NPAS3Q8IXF0 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
NPAS3Q8IXF0 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
NPAS3Q8IXF0 AC138969.3-201ENST00000546612 1459 ntBASIC17.06■□□□□ 0.32
NPAS3Q8IXF0 AC138932.2-201ENST00000548268 1459 ntBASIC17.06■□□□□ 0.32
NPAS3Q8IXF0 AC126755.4-201ENST00000549796 1459 ntBASIC17.06■□□□□ 0.32
NPAS3Q8IXF0 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
NPAS3Q8IXF0 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC17.06■□□□□ 0.32
NPAS3Q8IXF0 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
NPAS3Q8IXF0 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC17.06■□□□□ 0.32
NPAS3Q8IXF0 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
NPAS3Q8IXF0 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
NPAS3Q8IXF0 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
NPAS3Q8IXF0 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
NPAS3Q8IXF0 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
NPAS3Q8IXF0 RBM39-205ENST00000397370 612 ntTSL 2 BASIC17.06■□□□□ 0.32
NPAS3Q8IXF0 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
NPAS3Q8IXF0 U91328.1-201ENST00000437528 223 ntBASIC17.06■□□□□ 0.32
NPAS3Q8IXF0 RN7SL618P-201ENST00000477850 296 ntBASIC17.06■□□□□ 0.32
NPAS3Q8IXF0 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
NPAS3Q8IXF0 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC17.06■□□□□ 0.32
NPAS3Q8IXF0 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC17.06■□□□□ 0.32
NPAS3Q8IXF0 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
NPAS3Q8IXF0 PC-204ENST00000524491 1714 ntTSL 2 BASIC17.06■□□□□ 0.32
NPAS3Q8IXF0 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
NPAS3Q8IXF0 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
NPAS3Q8IXF0 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
NPAS3Q8IXF0 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC17.06■□□□□ 0.32
NPAS3Q8IXF0 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
NPAS3Q8IXF0 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
NPAS3Q8IXF0 CEP83-AS1-201ENST00000623122 2482 ntBASIC17.06■□□□□ 0.32
NPAS3Q8IXF0 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
NPAS3Q8IXF0 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
NPAS3Q8IXF0 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
NPAS3Q8IXF0 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
NPAS3Q8IXF0 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
NPAS3Q8IXF0 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
NPAS3Q8IXF0 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
NPAS3Q8IXF0 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC17.05■□□□□ 0.32
NPAS3Q8IXF0 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
NPAS3Q8IXF0 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
NPAS3Q8IXF0 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
NPAS3Q8IXF0 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
NPAS3Q8IXF0 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
NPAS3Q8IXF0 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
NPAS3Q8IXF0 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
NPAS3Q8IXF0 PCDHB17P-201ENST00000539533 2393 ntBASIC17.05■□□□□ 0.32
NPAS3Q8IXF0 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
NPAS3Q8IXF0 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
NPAS3Q8IXF0 DFFBP1-201ENST00000433250 979 ntBASIC17.05■□□□□ 0.32
NPAS3Q8IXF0 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC17.05■□□□□ 0.32
NPAS3Q8IXF0 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
NPAS3Q8IXF0 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC17.05■□□□□ 0.32
NPAS3Q8IXF0 AL512361.1-201ENST00000554200 418 ntBASIC17.05■□□□□ 0.32
NPAS3Q8IXF0 AC010336.2-201ENST00000564226 506 ntBASIC17.05■□□□□ 0.32
NPAS3Q8IXF0 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC17.05■□□□□ 0.32
NPAS3Q8IXF0 AC004790.1-201ENST00000612686 536 ntBASIC17.05■□□□□ 0.32
NPAS3Q8IXF0 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms