Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC19.54■□□□□ 0.72
SYNE3Q6ZMZ3 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC19.54■□□□□ 0.72
SYNE3Q6ZMZ3 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC19.54■□□□□ 0.72
SYNE3Q6ZMZ3 U1.21-201ENST00000580816 167 ntBASIC19.54■□□□□ 0.72
SYNE3Q6ZMZ3 AL031055.1-201ENST00000606362 631 ntBASIC19.54■□□□□ 0.72
SYNE3Q6ZMZ3 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC19.54■□□□□ 0.72
SYNE3Q6ZMZ3 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
SYNE3Q6ZMZ3 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SYNE3Q6ZMZ3 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
SYNE3Q6ZMZ3 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC19.54■□□□□ 0.72
SYNE3Q6ZMZ3 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SYNE3Q6ZMZ3 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SYNE3Q6ZMZ3 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC19.54■□□□□ 0.72
SYNE3Q6ZMZ3 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SYNE3Q6ZMZ3 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
SYNE3Q6ZMZ3 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SYNE3Q6ZMZ3 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC19.54■□□□□ 0.72
SYNE3Q6ZMZ3 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SYNE3Q6ZMZ3 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SYNE3Q6ZMZ3 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC19.53■□□□□ 0.72
SYNE3Q6ZMZ3 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SYNE3Q6ZMZ3 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
SYNE3Q6ZMZ3 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
SYNE3Q6ZMZ3 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
SYNE3Q6ZMZ3 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
SYNE3Q6ZMZ3 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SYNE3Q6ZMZ3 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SYNE3Q6ZMZ3 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SYNE3Q6ZMZ3 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC19.53■□□□□ 0.72
SYNE3Q6ZMZ3 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
SYNE3Q6ZMZ3 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SYNE3Q6ZMZ3 AC074386.1-202ENST00000463561 864 ntBASIC19.53■□□□□ 0.72
SYNE3Q6ZMZ3 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC19.53■□□□□ 0.72
SYNE3Q6ZMZ3 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SYNE3Q6ZMZ3 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC19.53■□□□□ 0.72
SYNE3Q6ZMZ3 AC021097.1-201ENST00000607902 574 ntBASIC19.53■□□□□ 0.72
SYNE3Q6ZMZ3 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC19.53■□□□□ 0.72
SYNE3Q6ZMZ3 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SYNE3Q6ZMZ3 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SYNE3Q6ZMZ3 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SYNE3Q6ZMZ3 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SYNE3Q6ZMZ3 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
SYNE3Q6ZMZ3 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
SYNE3Q6ZMZ3 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC19.52■□□□□ 0.72
SYNE3Q6ZMZ3 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
SYNE3Q6ZMZ3 TNRC18P3-201ENST00000441896 2691 ntBASIC19.52■□□□□ 0.72
SYNE3Q6ZMZ3 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SYNE3Q6ZMZ3 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SYNE3Q6ZMZ3 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC19.52■□□□□ 0.72
SYNE3Q6ZMZ3 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC19.52■□□□□ 0.72
SYNE3Q6ZMZ3 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SYNE3Q6ZMZ3 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SYNE3Q6ZMZ3 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC19.52■□□□□ 0.72
SYNE3Q6ZMZ3 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
SYNE3Q6ZMZ3 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
SYNE3Q6ZMZ3 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SYNE3Q6ZMZ3 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC19.52■□□□□ 0.72
SYNE3Q6ZMZ3 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC19.52■□□□□ 0.72
SYNE3Q6ZMZ3 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC19.52■□□□□ 0.72
SYNE3Q6ZMZ3 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SYNE3Q6ZMZ3 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SYNE3Q6ZMZ3 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
SYNE3Q6ZMZ3 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SYNE3Q6ZMZ3 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
SYNE3Q6ZMZ3 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
SYNE3Q6ZMZ3 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC19.52■□□□□ 0.72
SYNE3Q6ZMZ3 POLD2P1-201ENST00000511220 997 ntBASIC19.52■□□□□ 0.72
SYNE3Q6ZMZ3 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC19.52■□□□□ 0.72
SYNE3Q6ZMZ3 PDPK2P-202ENST00000562415 1191 ntBASIC19.52■□□□□ 0.72
SYNE3Q6ZMZ3 AC040169.1-201ENST00000565382 521 ntBASIC19.52■□□□□ 0.72
SYNE3Q6ZMZ3 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC19.52■□□□□ 0.72
SYNE3Q6ZMZ3 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC19.52■□□□□ 0.72
SYNE3Q6ZMZ3 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC19.52■□□□□ 0.72
SYNE3Q6ZMZ3 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC19.52■□□□□ 0.72
SYNE3Q6ZMZ3 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC19.52■□□□□ 0.72
SYNE3Q6ZMZ3 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC19.52■□□□□ 0.72
SYNE3Q6ZMZ3 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.71
SYNE3Q6ZMZ3 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
SYNE3Q6ZMZ3 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.71
SYNE3Q6ZMZ3 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC19.52■□□□□ 0.71
SYNE3Q6ZMZ3 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
SYNE3Q6ZMZ3 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SYNE3Q6ZMZ3 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SYNE3Q6ZMZ3 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SYNE3Q6ZMZ3 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SYNE3Q6ZMZ3 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC19.51■□□□□ 0.71
SYNE3Q6ZMZ3 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
SYNE3Q6ZMZ3 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
SYNE3Q6ZMZ3 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SYNE3Q6ZMZ3 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SYNE3Q6ZMZ3 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC19.51■□□□□ 0.71
SYNE3Q6ZMZ3 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SYNE3Q6ZMZ3 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
SYNE3Q6ZMZ3 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC19.51■□□□□ 0.71
SYNE3Q6ZMZ3 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
SYNE3Q6ZMZ3 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SYNE3Q6ZMZ3 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC19.51■□□□□ 0.71
SYNE3Q6ZMZ3 FIS1-203ENST00000442303 631 ntTSL 3 BASIC19.51■□□□□ 0.71
SYNE3Q6ZMZ3 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC19.51■□□□□ 0.71
SYNE3Q6ZMZ3 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC19.51■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms