Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
CCDC144BQ3MJ40 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC144BQ3MJ40 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
CCDC144BQ3MJ40 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC19.25■□□□□ 0.67
CCDC144BQ3MJ40 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
CCDC144BQ3MJ40 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
CCDC144BQ3MJ40 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC144BQ3MJ40 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC19.25■□□□□ 0.67
CCDC144BQ3MJ40 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC19.25■□□□□ 0.67
CCDC144BQ3MJ40 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC19.25■□□□□ 0.67
CCDC144BQ3MJ40 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC144BQ3MJ40 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC144BQ3MJ40 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC144BQ3MJ40 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
CCDC144BQ3MJ40 BCL2-203ENST00000589955 5011 ntBASIC19.25■□□□□ 0.67
CCDC144BQ3MJ40 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC144BQ3MJ40 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC19.25■□□□□ 0.67
CCDC144BQ3MJ40 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC19.25■□□□□ 0.67
CCDC144BQ3MJ40 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC144BQ3MJ40 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
CCDC144BQ3MJ40 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC144BQ3MJ40 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC19.25■□□□□ 0.67
CCDC144BQ3MJ40 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC19.25■□□□□ 0.67
CCDC144BQ3MJ40 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC144BQ3MJ40 HNRNPFP1-201ENST00000391730 1133 ntBASIC19.25■□□□□ 0.67
CCDC144BQ3MJ40 AC005237.2-201ENST00000434368 219 ntBASIC19.25■□□□□ 0.67
CCDC144BQ3MJ40 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC19.25■□□□□ 0.67
CCDC144BQ3MJ40 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC19.25■□□□□ 0.67
CCDC144BQ3MJ40 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC19.25■□□□□ 0.67
CCDC144BQ3MJ40 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC19.25■□□□□ 0.67
CCDC144BQ3MJ40 INO80C-206ENST00000586489 594 ntTSL 3 BASIC19.25■□□□□ 0.67
CCDC144BQ3MJ40 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC19.25■□□□□ 0.67
CCDC144BQ3MJ40 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC19.25■□□□□ 0.67
CCDC144BQ3MJ40 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC144BQ3MJ40 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC144BQ3MJ40 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC144BQ3MJ40 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC19.25■□□□□ 0.67
CCDC144BQ3MJ40 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC144BQ3MJ40 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC144BQ3MJ40 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
CCDC144BQ3MJ40 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC144BQ3MJ40 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC144BQ3MJ40 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC144BQ3MJ40 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC144BQ3MJ40 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC144BQ3MJ40 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC144BQ3MJ40 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC144BQ3MJ40 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
CCDC144BQ3MJ40 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC144BQ3MJ40 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
CCDC144BQ3MJ40 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC144BQ3MJ40 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC144BQ3MJ40 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC144BQ3MJ40 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC144BQ3MJ40 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC144BQ3MJ40 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC144BQ3MJ40 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC144BQ3MJ40 MMP17-203ENST00000535004 719 ntTSL 3 BASIC19.24■□□□□ 0.67
CCDC144BQ3MJ40 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC19.24■□□□□ 0.67
CCDC144BQ3MJ40 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC19.24■□□□□ 0.67
CCDC144BQ3MJ40 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC144BQ3MJ40 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
CCDC144BQ3MJ40 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC144BQ3MJ40 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
CCDC144BQ3MJ40 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC144BQ3MJ40 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC144BQ3MJ40 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC144BQ3MJ40 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC19.24■□□□□ 0.67
CCDC144BQ3MJ40 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
CCDC144BQ3MJ40 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC144BQ3MJ40 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC144BQ3MJ40 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC144BQ3MJ40 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC144BQ3MJ40 HNRNPRP1-201ENST00000453465 1695 ntBASIC19.24■□□□□ 0.67
CCDC144BQ3MJ40 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC19.23■□□□□ 0.67
CCDC144BQ3MJ40 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC19.23■□□□□ 0.67
CCDC144BQ3MJ40 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC19.23■□□□□ 0.67
CCDC144BQ3MJ40 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC19.23■□□□□ 0.67
CCDC144BQ3MJ40 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC144BQ3MJ40 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
CCDC144BQ3MJ40 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC144BQ3MJ40 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC144BQ3MJ40 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC144BQ3MJ40 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC144BQ3MJ40 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
CCDC144BQ3MJ40 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
CCDC144BQ3MJ40 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC144BQ3MJ40 AL592309.1-201ENST00000443127 649 ntBASIC19.23■□□□□ 0.67
CCDC144BQ3MJ40 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC144BQ3MJ40 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC19.23■□□□□ 0.67
CCDC144BQ3MJ40 AC079140.1-201ENST00000508039 487 ntBASIC19.23■□□□□ 0.67
CCDC144BQ3MJ40 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC19.23■□□□□ 0.67
CCDC144BQ3MJ40 DUT-210ENST00000559935 569 ntTSL 3 BASIC19.23■□□□□ 0.67
CCDC144BQ3MJ40 MIR4515-201ENST00000584082 81 ntBASIC19.23■□□□□ 0.67
CCDC144BQ3MJ40 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC19.23■□□□□ 0.67
CCDC144BQ3MJ40 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC19.23■□□□□ 0.67
CCDC144BQ3MJ40 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC144BQ3MJ40 Z92544.3-201ENST00000624747 417 ntBASIC19.23■□□□□ 0.67
CCDC144BQ3MJ40 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC144BQ3MJ40 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC19.23■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 82.5 ms