Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
PRKDCP78527 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
PRKDCP78527 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC11.72□□□□□ -0.53
PRKDCP78527 KDSR-201ENST00000326575 1024 ntTSL 2 BASIC11.72□□□□□ -0.53
PRKDCP78527 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC11.72□□□□□ -0.53
PRKDCP78527 VMO1-203ENST00000416307 712 ntTSL 2 BASIC11.72□□□□□ -0.53
PRKDCP78527 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC11.72□□□□□ -0.53
PRKDCP78527 AC068134.1-201ENST00000441266 481 ntTSL 3 BASIC11.72□□□□□ -0.53
PRKDCP78527 MIR3147-201ENST00000577811 66 ntBASIC11.72□□□□□ -0.53
PRKDCP78527 SIGLEC29P-201ENST00000599873 1114 ntBASIC11.72□□□□□ -0.53
PRKDCP78527 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
PRKDCP78527 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC11.72□□□□□ -0.53
PRKDCP78527 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
PRKDCP78527 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC11.72□□□□□ -0.53
PRKDCP78527 USP49-202ENST00000373010 2446 ntTSL 5 BASIC11.72□□□□□ -0.53
PRKDCP78527 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC11.72□□□□□ -0.53
PRKDCP78527 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
PRKDCP78527 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
PRKDCP78527 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
PRKDCP78527 DDX39A-201ENST00000242776 1471 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
PRKDCP78527 ATP5H-201ENST00000301587 603 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
PRKDCP78527 GUK1-206ENST00000366723 845 ntTSL 5 BASIC11.72□□□□□ -0.53
PRKDCP78527 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC11.72□□□□□ -0.53
PRKDCP78527 RN7SL11P-201ENST00000471305 293 ntBASIC11.72□□□□□ -0.53
PRKDCP78527 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
PRKDCP78527 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC11.72□□□□□ -0.53
PRKDCP78527 AC138649.2-201ENST00000615886 705 ntBASIC11.72□□□□□ -0.53
PRKDCP78527 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
PRKDCP78527 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
PRKDCP78527 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC11.72□□□□□ -0.53
PRKDCP78527 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC11.72□□□□□ -0.53
PRKDCP78527 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
PRKDCP78527 AC015818.8-201ENST00000587907 1519 ntBASIC11.72□□□□□ -0.53
PRKDCP78527 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC11.72□□□□□ -0.53
PRKDCP78527 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
PRKDCP78527 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC11.72□□□□□ -0.53
PRKDCP78527 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC11.72□□□□□ -0.53
PRKDCP78527 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC11.72□□□□□ -0.53
PRKDCP78527 SZRD1-203ENST00000471507 892 ntAPPRIS ALT1 TSL 2 BASIC11.72□□□□□ -0.53
PRKDCP78527 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC11.72□□□□□ -0.53
PRKDCP78527 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC11.72□□□□□ -0.53
PRKDCP78527 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC11.72□□□□□ -0.53
PRKDCP78527 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC11.72□□□□□ -0.53
PRKDCP78527 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC11.72□□□□□ -0.53
PRKDCP78527 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
PRKDCP78527 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
PRKDCP78527 AL355312.1-201ENST00000407115 2176 ntBASIC11.72□□□□□ -0.53
PRKDCP78527 FBXO16-202ENST00000380254 1343 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
PRKDCP78527 C12orf76-207ENST00000549724 1302 ntTSL 5 BASIC11.72□□□□□ -0.53
PRKDCP78527 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC11.71□□□□□ -0.53
PRKDCP78527 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC11.71□□□□□ -0.53
PRKDCP78527 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
PRKDCP78527 LINC01629-201ENST00000553613 581 ntTSL 4 BASIC11.71□□□□□ -0.53
PRKDCP78527 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC11.71□□□□□ -0.53
PRKDCP78527 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC11.71□□□□□ -0.53
PRKDCP78527 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
PRKDCP78527 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC11.71□□□□□ -0.53
PRKDCP78527 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC11.71□□□□□ -0.53
PRKDCP78527 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
PRKDCP78527 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC11.71□□□□□ -0.53
PRKDCP78527 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC11.71□□□□□ -0.53
PRKDCP78527 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC11.71□□□□□ -0.53
PRKDCP78527 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
PRKDCP78527 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC11.71□□□□□ -0.53
PRKDCP78527 AC125604.1-201ENST00000496255 707 ntBASIC11.71□□□□□ -0.53
PRKDCP78527 AHRR-211ENST00000515206 462 ntTSL 5 BASIC11.71□□□□□ -0.53
PRKDCP78527 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.53
PRKDCP78527 AC135983.4-201ENST00000564116 1262 ntBASIC11.71□□□□□ -0.53
PRKDCP78527 AP001063.1-201ENST00000568332 529 ntBASIC11.71□□□□□ -0.54
PRKDCP78527 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC11.71□□□□□ -0.54
PRKDCP78527 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
PRKDCP78527 SPIB-207ENST00000597855 564 ntTSL 4 BASIC11.71□□□□□ -0.54
PRKDCP78527 METTL26-214ENST00000614890 801 ntTSL 3 BASIC11.71□□□□□ -0.54
PRKDCP78527 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.54
PRKDCP78527 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC11.71□□□□□ -0.54
PRKDCP78527 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
PRKDCP78527 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
PRKDCP78527 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.54
PRKDCP78527 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
PRKDCP78527 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
PRKDCP78527 CELA2B-201ENST00000375910 923 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
PRKDCP78527 SRSF10-211ENST00000484146 1089 ntTSL 2 BASIC11.71□□□□□ -0.54
PRKDCP78527 DYRK1B-208ENST00000601972 772 ntTSL 2 BASIC11.71□□□□□ -0.54
PRKDCP78527 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
PRKDCP78527 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
PRKDCP78527 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC11.7□□□□□ -0.54
PRKDCP78527 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
PRKDCP78527 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC11.7□□□□□ -0.54
PRKDCP78527 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC11.7□□□□□ -0.54
PRKDCP78527 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC11.7□□□□□ -0.54
PRKDCP78527 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
PRKDCP78527 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
PRKDCP78527 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC11.7□□□□□ -0.54
PRKDCP78527 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC11.7□□□□□ -0.54
PRKDCP78527 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC11.7□□□□□ -0.54
PRKDCP78527 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
PRKDCP78527 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
PRKDCP78527 AC093724.1-201ENST00000448659 1027 ntBASIC11.7□□□□□ -0.54
PRKDCP78527 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
PRKDCP78527 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC11.7□□□□□ -0.54
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms