Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 WFDC1-204ENST00000613603 549 ntBASIC20.33■□□□□ 0.85
NUP98P52948 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
NUP98P52948 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC20.33■□□□□ 0.84
NUP98P52948 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
NUP98P52948 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
NUP98P52948 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
NUP98P52948 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC20.33■□□□□ 0.84
NUP98P52948 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC20.33■□□□□ 0.84
NUP98P52948 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
NUP98P52948 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
NUP98P52948 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
NUP98P52948 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
NUP98P52948 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC20.32■□□□□ 0.84
NUP98P52948 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
NUP98P52948 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
NUP98P52948 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC20.32■□□□□ 0.84
NUP98P52948 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC20.32■□□□□ 0.84
NUP98P52948 ARSEP1-201ENST00000420443 635 ntBASIC20.32■□□□□ 0.84
NUP98P52948 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC20.32■□□□□ 0.84
NUP98P52948 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC20.32■□□□□ 0.84
NUP98P52948 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC20.32■□□□□ 0.84
NUP98P52948 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC20.32■□□□□ 0.84
NUP98P52948 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC20.32■□□□□ 0.84
NUP98P52948 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
NUP98P52948 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC20.32■□□□□ 0.84
NUP98P52948 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
NUP98P52948 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC20.32■□□□□ 0.84
NUP98P52948 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC20.32■□□□□ 0.84
NUP98P52948 GRN-214ENST00000589265 1632 ntTSL 5 BASIC20.32■□□□□ 0.84
NUP98P52948 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC20.32■□□□□ 0.84
NUP98P52948 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
NUP98P52948 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
NUP98P52948 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
NUP98P52948 AC087499.6-201ENST00000411576 835 ntBASIC20.32■□□□□ 0.84
NUP98P52948 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
NUP98P52948 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
NUP98P52948 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC20.32■□□□□ 0.84
NUP98P52948 PAM16-215ENST00000577031 548 ntTSL 4 BASIC20.32■□□□□ 0.84
NUP98P52948 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC20.32■□□□□ 0.84
NUP98P52948 AL592424.1-201ENST00000563624 1536 ntBASIC20.32■□□□□ 0.84
NUP98P52948 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC20.31■□□□□ 0.84
NUP98P52948 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
NUP98P52948 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
NUP98P52948 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
NUP98P52948 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC20.31■□□□□ 0.84
NUP98P52948 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC20.31■□□□□ 0.84
NUP98P52948 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC20.31■□□□□ 0.84
NUP98P52948 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
NUP98P52948 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC20.31■□□□□ 0.84
NUP98P52948 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
NUP98P52948 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
NUP98P52948 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC20.31■□□□□ 0.84
NUP98P52948 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC20.31■□□□□ 0.84
NUP98P52948 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC20.31■□□□□ 0.84
NUP98P52948 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC20.31■□□□□ 0.84
NUP98P52948 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC20.31■□□□□ 0.84
NUP98P52948 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
NUP98P52948 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
NUP98P52948 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC20.31■□□□□ 0.84
NUP98P52948 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC20.31■□□□□ 0.84
NUP98P52948 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
NUP98P52948 RPSAP52-203ENST00000622976 1023 ntBASIC20.31■□□□□ 0.84
NUP98P52948 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
NUP98P52948 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
NUP98P52948 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
NUP98P52948 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
NUP98P52948 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC20.3■□□□□ 0.84
NUP98P52948 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
NUP98P52948 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
NUP98P52948 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
NUP98P52948 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
NUP98P52948 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
NUP98P52948 MXI1-205ENST00000393134 889 ntTSL 2 BASIC20.3■□□□□ 0.84
NUP98P52948 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC20.3■□□□□ 0.84
NUP98P52948 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
NUP98P52948 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC20.3■□□□□ 0.84
NUP98P52948 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
NUP98P52948 AL359881.2-201ENST00000602973 570 ntBASIC20.3■□□□□ 0.84
NUP98P52948 SERF2-217ENST00000630046 862 ntTSL 5 BASIC20.3■□□□□ 0.84
NUP98P52948 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
NUP98P52948 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
NUP98P52948 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
NUP98P52948 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
NUP98P52948 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC20.3■□□□□ 0.84
NUP98P52948 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC20.3■□□□□ 0.84
NUP98P52948 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
NUP98P52948 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC20.3■□□□□ 0.84
NUP98P52948 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC20.3■□□□□ 0.84
NUP98P52948 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
NUP98P52948 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
NUP98P52948 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
NUP98P52948 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
NUP98P52948 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
NUP98P52948 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
NUP98P52948 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
NUP98P52948 GLI4-203ENST00000517468 963 ntTSL 5 BASIC20.3■□□□□ 0.84
NUP98P52948 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC20.3■□□□□ 0.84
NUP98P52948 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
NUP98P52948 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
NUP98P52948 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms