Protein–RNA interactions for Protein: P52945

PDX1, Pancreas/duodenum homeobox protein 1, humanhuman

Predictions only

Length 283 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDX1P52945 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
PDX1P52945 TOP3BP1-201ENST00000420768 1380 ntBASIC16.11■□□□□ 0.17
PDX1P52945 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PDX1P52945 LINC02012-201ENST00000608206 1725 ntBASIC16.11■□□□□ 0.17
PDX1P52945 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
PDX1P52945 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC16.1■□□□□ 0.17
PDX1P52945 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PDX1P52945 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC16.1■□□□□ 0.17
PDX1P52945 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PDX1P52945 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC16.1■□□□□ 0.17
PDX1P52945 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC16.1■□□□□ 0.17
PDX1P52945 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PDX1P52945 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PDX1P52945 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PDX1P52945 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
PDX1P52945 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
PDX1P52945 MIR346-201ENST00000362234 95 ntBASIC16.1■□□□□ 0.17
PDX1P52945 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PDX1P52945 IGHV3-42-201ENST00000520410 361 ntBASIC16.1■□□□□ 0.17
PDX1P52945 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC16.1■□□□□ 0.17
PDX1P52945 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC16.1■□□□□ 0.17
PDX1P52945 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC16.1■□□□□ 0.17
PDX1P52945 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
PDX1P52945 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC16.1■□□□□ 0.17
PDX1P52945 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PDX1P52945 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PDX1P52945 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PDX1P52945 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PDX1P52945 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PDX1P52945 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PDX1P52945 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PDX1P52945 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC16.1■□□□□ 0.17
PDX1P52945 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PDX1P52945 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
PDX1P52945 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PDX1P52945 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC16.1■□□□□ 0.17
PDX1P52945 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PDX1P52945 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC16.09■□□□□ 0.17
PDX1P52945 AC092053.1-201ENST00000605787 1936 ntBASIC16.09■□□□□ 0.17
PDX1P52945 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PDX1P52945 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PDX1P52945 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PDX1P52945 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PDX1P52945 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PDX1P52945 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PDX1P52945 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC16.09■□□□□ 0.17
PDX1P52945 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PDX1P52945 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC16.09■□□□□ 0.17
PDX1P52945 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PDX1P52945 AC016027.1-202ENST00000607927 1699 ntBASIC16.09■□□□□ 0.17
PDX1P52945 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
PDX1P52945 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC16.09■□□□□ 0.17
PDX1P52945 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
PDX1P52945 HARS-204ENST00000438307 1789 ntTSL 2 BASIC16.09■□□□□ 0.17
PDX1P52945 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC16.09■□□□□ 0.17
PDX1P52945 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC16.09■□□□□ 0.17
PDX1P52945 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC16.09■□□□□ 0.17
PDX1P52945 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC16.09■□□□□ 0.17
PDX1P52945 AC092580.3-201ENST00000430932 139 ntBASIC16.09■□□□□ 0.17
PDX1P52945 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC16.09■□□□□ 0.17
PDX1P52945 FAM207CP-201ENST00000443486 507 ntBASIC16.09■□□□□ 0.17
PDX1P52945 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PDX1P52945 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
PDX1P52945 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC16.09■□□□□ 0.17
PDX1P52945 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
PDX1P52945 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC16.09■□□□□ 0.17
PDX1P52945 AC012645.4-201ENST00000610691 1061 ntBASIC16.09■□□□□ 0.17
PDX1P52945 WT1-AS_2.1-201ENST00000613208 137 ntBASIC16.09■□□□□ 0.17
PDX1P52945 AL035252.4-201ENST00000624174 288 ntBASIC16.09■□□□□ 0.17
PDX1P52945 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC16.09■□□□□ 0.17
PDX1P52945 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC16.09■□□□□ 0.17
PDX1P52945 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
PDX1P52945 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PDX1P52945 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PDX1P52945 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC16.09■□□□□ 0.17
PDX1P52945 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PDX1P52945 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
PDX1P52945 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC16.09■□□□□ 0.17
PDX1P52945 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
PDX1P52945 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PDX1P52945 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
PDX1P52945 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.17
PDX1P52945 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.17
PDX1P52945 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
PDX1P52945 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.17
PDX1P52945 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.17
PDX1P52945 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC16.08■□□□□ 0.17
PDX1P52945 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.17
PDX1P52945 NKILA-202ENST00000614771 2598 ntBASIC16.08■□□□□ 0.17
PDX1P52945 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.17
PDX1P52945 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.17
PDX1P52945 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PDX1P52945 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC16.08■□□□□ 0.16
PDX1P52945 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
PDX1P52945 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
PDX1P52945 AC005034.1-201ENST00000426657 489 ntBASIC16.08■□□□□ 0.16
PDX1P52945 GSAP-205ENST00000430584 600 ntTSL 5 BASIC16.08■□□□□ 0.16
PDX1P52945 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC16.08■□□□□ 0.16
PDX1P52945 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC16.08■□□□□ 0.16
PDX1P52945 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms