Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CTCFP49711 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CTCFP49711 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC19.1■□□□□ 0.65
CTCFP49711 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC19.1■□□□□ 0.65
CTCFP49711 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC19.1■□□□□ 0.65
CTCFP49711 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CTCFP49711 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC19.09■□□□□ 0.65
CTCFP49711 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CTCFP49711 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC19.09■□□□□ 0.65
CTCFP49711 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CTCFP49711 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC19.09■□□□□ 0.65
CTCFP49711 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CTCFP49711 AC135776.1-201ENST00000319817 2481 ntBASIC19.09■□□□□ 0.65
CTCFP49711 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CTCFP49711 AL662890.1-201ENST00000396818 632 ntBASIC19.09■□□□□ 0.65
CTCFP49711 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CTCFP49711 FAM3B-203ENST00000398647 864 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
CTCFP49711 FAM3B-204ENST00000398652 1125 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CTCFP49711 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC19.09■□□□□ 0.65
CTCFP49711 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC19.09■□□□□ 0.65
CTCFP49711 AL589987.1-201ENST00000453380 819 ntBASIC19.09■□□□□ 0.65
CTCFP49711 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC19.09■□□□□ 0.65
CTCFP49711 TMEM198B-204ENST00000484016 896 ntBASIC19.09■□□□□ 0.65
CTCFP49711 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC19.09■□□□□ 0.65
CTCFP49711 ARL16-214ENST00000621051 1181 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CTCFP49711 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
CTCFP49711 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC19.09■□□□□ 0.65
CTCFP49711 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC19.09■□□□□ 0.65
CTCFP49711 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
CTCFP49711 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
CTCFP49711 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC19.09■□□□□ 0.65
CTCFP49711 CD276-203ENST00000537340 2439 ntTSL 2 BASIC19.09■□□□□ 0.65
CTCFP49711 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
CTCFP49711 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.65
CTCFP49711 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
CTCFP49711 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC19.08■□□□□ 0.65
CTCFP49711 HNRNPRP1-201ENST00000453465 1695 ntBASIC19.08■□□□□ 0.65
CTCFP49711 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
CTCFP49711 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
CTCFP49711 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.65
CTCFP49711 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CTCFP49711 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC19.08■□□□□ 0.65
CTCFP49711 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC19.08■□□□□ 0.65
CTCFP49711 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CTCFP49711 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CTCFP49711 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC19.08■□□□□ 0.64
CTCFP49711 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CTCFP49711 AC091390.4-201ENST00000484974 491 ntTSL 3 BASIC19.08■□□□□ 0.64
CTCFP49711 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC19.08■□□□□ 0.64
CTCFP49711 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC19.08■□□□□ 0.64
CTCFP49711 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC19.08■□□□□ 0.64
CTCFP49711 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC19.08■□□□□ 0.64
CTCFP49711 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC19.08■□□□□ 0.64
CTCFP49711 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC19.08■□□□□ 0.64
CTCFP49711 RN7SL560P-201ENST00000577943 264 ntBASIC19.08■□□□□ 0.64
CTCFP49711 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC19.08■□□□□ 0.64
CTCFP49711 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC19.08■□□□□ 0.64
CTCFP49711 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CTCFP49711 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CTCFP49711 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC19.08■□□□□ 0.64
CTCFP49711 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CTCFP49711 CLK3P2-201ENST00000427566 1453 ntBASIC19.08■□□□□ 0.64
CTCFP49711 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC19.08■□□□□ 0.64
CTCFP49711 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CTCFP49711 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
CTCFP49711 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC19.08■□□□□ 0.64
CTCFP49711 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CTCFP49711 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
CTCFP49711 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
CTCFP49711 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
CTCFP49711 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
CTCFP49711 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC19.07■□□□□ 0.64
CTCFP49711 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC19.07■□□□□ 0.64
CTCFP49711 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CTCFP49711 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
CTCFP49711 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
CTCFP49711 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC19.07■□□□□ 0.64
CTCFP49711 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CTCFP49711 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CTCFP49711 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
CTCFP49711 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
CTCFP49711 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CTCFP49711 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC19.07■□□□□ 0.64
CTCFP49711 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC19.07■□□□□ 0.64
CTCFP49711 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC19.07■□□□□ 0.64
CTCFP49711 AC104306.2-201ENST00000451877 341 ntBASIC19.07■□□□□ 0.64
CTCFP49711 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC19.07■□□□□ 0.64
CTCFP49711 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC19.07■□□□□ 0.64
CTCFP49711 PRYP6-201ENST00000514804 343 ntBASIC19.07■□□□□ 0.64
CTCFP49711 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC19.07■□□□□ 0.64
CTCFP49711 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC19.07■□□□□ 0.64
CTCFP49711 AC244452.3-201ENST00000636814 210 ntBASIC19.07■□□□□ 0.64
CTCFP49711 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CTCFP49711 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CTCFP49711 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CTCFP49711 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CTCFP49711 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
CTCFP49711 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CTCFP49711 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
CTCFP49711 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms