Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
SMARCA1P28370 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC18.94■□□□□ 0.62
SMARCA1P28370 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SMARCA1P28370 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
SMARCA1P28370 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC18.94■□□□□ 0.62
SMARCA1P28370 ALOX12P2-203ENST00000570921 1945 ntBASIC18.94■□□□□ 0.62
SMARCA1P28370 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC18.94■□□□□ 0.62
SMARCA1P28370 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SMARCA1P28370 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
SMARCA1P28370 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC18.94■□□□□ 0.62
SMARCA1P28370 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SMARCA1P28370 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SMARCA1P28370 GGCT-205ENST00000409436 954 ntTSL 3 BASIC18.94■□□□□ 0.62
SMARCA1P28370 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SMARCA1P28370 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC18.94■□□□□ 0.62
SMARCA1P28370 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC18.94■□□□□ 0.62
SMARCA1P28370 AC069262.1-201ENST00000539058 672 ntBASIC18.94■□□□□ 0.62
SMARCA1P28370 AC025678.2-201ENST00000562061 970 ntBASIC18.94■□□□□ 0.62
SMARCA1P28370 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC18.94■□□□□ 0.62
SMARCA1P28370 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC18.94■□□□□ 0.62
SMARCA1P28370 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SMARCA1P28370 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SMARCA1P28370 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC18.94■□□□□ 0.62
SMARCA1P28370 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SMARCA1P28370 WAC-202ENST00000347934 2839 ntTSL 5 BASIC18.94■□□□□ 0.62
SMARCA1P28370 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SMARCA1P28370 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SMARCA1P28370 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC18.94■□□□□ 0.62
SMARCA1P28370 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC18.94■□□□□ 0.62
SMARCA1P28370 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SMARCA1P28370 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
SMARCA1P28370 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SMARCA1P28370 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
SMARCA1P28370 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SMARCA1P28370 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
SMARCA1P28370 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC18.93■□□□□ 0.62
SMARCA1P28370 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
SMARCA1P28370 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC18.93■□□□□ 0.62
SMARCA1P28370 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC18.93■□□□□ 0.62
SMARCA1P28370 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SMARCA1P28370 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
SMARCA1P28370 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
SMARCA1P28370 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
SMARCA1P28370 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
SMARCA1P28370 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC18.93■□□□□ 0.62
SMARCA1P28370 OR6D1P-202ENST00000641007 5290 ntBASIC18.93■□□□□ 0.62
SMARCA1P28370 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
SMARCA1P28370 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SMARCA1P28370 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SMARCA1P28370 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SMARCA1P28370 SPDYE7P-202ENST00000420373 878 ntBASIC18.93■□□□□ 0.62
SMARCA1P28370 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC18.93■□□□□ 0.62
SMARCA1P28370 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC18.93■□□□□ 0.62
SMARCA1P28370 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC18.93■□□□□ 0.62
SMARCA1P28370 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC18.93■□□□□ 0.62
SMARCA1P28370 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC18.93■□□□□ 0.62
SMARCA1P28370 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC18.93■□□□□ 0.62
SMARCA1P28370 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
SMARCA1P28370 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SMARCA1P28370 AC061975.2-201ENST00000581722 295 ntBASIC18.93■□□□□ 0.62
SMARCA1P28370 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC18.93■□□□□ 0.62
SMARCA1P28370 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC18.93■□□□□ 0.62
SMARCA1P28370 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SMARCA1P28370 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SMARCA1P28370 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC18.93■□□□□ 0.62
SMARCA1P28370 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SMARCA1P28370 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SMARCA1P28370 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
SMARCA1P28370 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SMARCA1P28370 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SMARCA1P28370 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC18.92■□□□□ 0.62
SMARCA1P28370 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
SMARCA1P28370 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SMARCA1P28370 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC18.92■□□□□ 0.62
SMARCA1P28370 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SMARCA1P28370 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SMARCA1P28370 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC18.92■□□□□ 0.62
SMARCA1P28370 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
SMARCA1P28370 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SMARCA1P28370 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC18.92■□□□□ 0.62
SMARCA1P28370 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC18.92■□□□□ 0.62
SMARCA1P28370 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC18.92■□□□□ 0.62
SMARCA1P28370 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SMARCA1P28370 CD81-202ENST00000381036 880 ntTSL 3 BASIC18.92■□□□□ 0.62
SMARCA1P28370 PON3-203ENST00000427422 894 ntTSL 3 BASIC18.92■□□□□ 0.62
SMARCA1P28370 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC18.92■□□□□ 0.62
SMARCA1P28370 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC18.92■□□□□ 0.62
SMARCA1P28370 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC18.92■□□□□ 0.62
SMARCA1P28370 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SMARCA1P28370 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SMARCA1P28370 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC18.92■□□□□ 0.62
SMARCA1P28370 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC18.92■□□□□ 0.62
SMARCA1P28370 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
SMARCA1P28370 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC18.92■□□□□ 0.62
SMARCA1P28370 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SMARCA1P28370 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
SMARCA1P28370 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SMARCA1P28370 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SMARCA1P28370 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SMARCA1P28370 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC18.91■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms