Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
HLA-DMBP28068 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC12.7□□□□□ -0.38
HLA-DMBP28068 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
HLA-DMBP28068 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC12.7□□□□□ -0.38
HLA-DMBP28068 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
HLA-DMBP28068 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC12.7□□□□□ -0.38
HLA-DMBP28068 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
HLA-DMBP28068 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
HLA-DMBP28068 TSPY26P-202ENST00000565928 3884 ntBASIC12.7□□□□□ -0.38
HLA-DMBP28068 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
HLA-DMBP28068 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC12.7□□□□□ -0.38
HLA-DMBP28068 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
HLA-DMBP28068 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
HLA-DMBP28068 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
HLA-DMBP28068 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
HLA-DMBP28068 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
HLA-DMBP28068 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC12.7□□□□□ -0.38
HLA-DMBP28068 CASK-202ENST00000378158 3848 ntTSL 5 BASIC12.7□□□□□ -0.38
HLA-DMBP28068 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC12.7□□□□□ -0.38
HLA-DMBP28068 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC12.7□□□□□ -0.38
HLA-DMBP28068 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC12.7□□□□□ -0.38
HLA-DMBP28068 AC079776.4-201ENST00000511039 504 ntBASIC12.7□□□□□ -0.38
HLA-DMBP28068 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
HLA-DMBP28068 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
HLA-DMBP28068 AL662844.1-201ENST00000546340 181 ntBASIC12.7□□□□□ -0.38
HLA-DMBP28068 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC12.7□□□□□ -0.38
HLA-DMBP28068 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.38
HLA-DMBP28068 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC12.7□□□□□ -0.38
HLA-DMBP28068 SDCCAG3P1-201ENST00000589292 1150 ntBASIC12.7□□□□□ -0.38
HLA-DMBP28068 AL139424.1-201ENST00000607572 797 ntBASIC12.7□□□□□ -0.38
HLA-DMBP28068 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC12.7□□□□□ -0.38
HLA-DMBP28068 SNX33P1-201ENST00000592116 1762 ntBASIC12.7□□□□□ -0.38
HLA-DMBP28068 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
HLA-DMBP28068 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
HLA-DMBP28068 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
HLA-DMBP28068 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
HLA-DMBP28068 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
HLA-DMBP28068 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
HLA-DMBP28068 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
HLA-DMBP28068 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
HLA-DMBP28068 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
HLA-DMBP28068 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC12.7□□□□□ -0.38
HLA-DMBP28068 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
HLA-DMBP28068 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
HLA-DMBP28068 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
HLA-DMBP28068 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
HLA-DMBP28068 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
HLA-DMBP28068 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HLA-DMBP28068 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
HLA-DMBP28068 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
HLA-DMBP28068 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
HLA-DMBP28068 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC12.69□□□□□ -0.38
HLA-DMBP28068 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
HLA-DMBP28068 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
HLA-DMBP28068 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HLA-DMBP28068 HARS-204ENST00000438307 1789 ntTSL 2 BASIC12.69□□□□□ -0.38
HLA-DMBP28068 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC12.69□□□□□ -0.38
HLA-DMBP28068 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC12.69□□□□□ -0.38
HLA-DMBP28068 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC12.69□□□□□ -0.38
HLA-DMBP28068 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC12.69□□□□□ -0.38
HLA-DMBP28068 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC12.69□□□□□ -0.38
HLA-DMBP28068 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC12.69□□□□□ -0.38
HLA-DMBP28068 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HLA-DMBP28068 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
HLA-DMBP28068 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC12.69□□□□□ -0.38
HLA-DMBP28068 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HLA-DMBP28068 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
HLA-DMBP28068 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
HLA-DMBP28068 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
HLA-DMBP28068 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HLA-DMBP28068 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC12.69□□□□□ -0.38
HLA-DMBP28068 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HLA-DMBP28068 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC12.69□□□□□ -0.38
HLA-DMBP28068 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC12.69□□□□□ -0.38
HLA-DMBP28068 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC12.69□□□□□ -0.38
HLA-DMBP28068 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC12.69□□□□□ -0.38
HLA-DMBP28068 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HLA-DMBP28068 AC013467.2-201ENST00000605472 835 ntBASIC12.69□□□□□ -0.38
HLA-DMBP28068 AC008608.2-201ENST00000606089 416 ntBASIC12.69□□□□□ -0.38
HLA-DMBP28068 AL139288.1-201ENST00000623748 933 ntBASIC12.69□□□□□ -0.38
HLA-DMBP28068 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
HLA-DMBP28068 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC12.69□□□□□ -0.38
HLA-DMBP28068 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HLA-DMBP28068 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
HLA-DMBP28068 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HLA-DMBP28068 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
HLA-DMBP28068 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HLA-DMBP28068 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HLA-DMBP28068 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC12.69□□□□□ -0.38
HLA-DMBP28068 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC12.69□□□□□ -0.38
HLA-DMBP28068 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC12.69□□□□□ -0.38
HLA-DMBP28068 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HLA-DMBP28068 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
HLA-DMBP28068 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
HLA-DMBP28068 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
HLA-DMBP28068 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HLA-DMBP28068 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HLA-DMBP28068 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HLA-DMBP28068 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
HLA-DMBP28068 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 103.1 ms