Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL5A1P20908 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL5A1P20908 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL5A1P20908 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC15.67■□□□□ 0.1
COL5A1P20908 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC15.67■□□□□ 0.1
COL5A1P20908 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL5A1P20908 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC15.67■□□□□ 0.1
COL5A1P20908 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC15.67■□□□□ 0.1
COL5A1P20908 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL5A1P20908 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL5A1P20908 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
COL5A1P20908 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
COL5A1P20908 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC15.66■□□□□ 0.1
COL5A1P20908 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL5A1P20908 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC15.66■□□□□ 0.1
COL5A1P20908 RAD18-204ENST00000418463 563 ntTSL 4 BASIC15.66■□□□□ 0.1
COL5A1P20908 RAD18-205ENST00000421052 582 ntTSL 3 BASIC15.66■□□□□ 0.1
COL5A1P20908 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC15.66■□□□□ 0.1
COL5A1P20908 EEF1DP4-201ENST00000446006 880 ntBASIC15.66■□□□□ 0.1
COL5A1P20908 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC15.66■□□□□ 0.1
COL5A1P20908 MIR4259-201ENST00000584466 101 ntBASIC15.66■□□□□ 0.1
COL5A1P20908 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL5A1P20908 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
COL5A1P20908 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
COL5A1P20908 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL5A1P20908 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
COL5A1P20908 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL5A1P20908 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL5A1P20908 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
COL5A1P20908 AL031731.1-201ENST00000642131 2094 ntBASIC15.66■□□□□ 0.1
COL5A1P20908 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
COL5A1P20908 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC15.66■□□□□ 0.1
COL5A1P20908 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC15.66■□□□□ 0.1
COL5A1P20908 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL5A1P20908 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL5A1P20908 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL5A1P20908 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
COL5A1P20908 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC15.66■□□□□ 0.1
COL5A1P20908 BOLA2P3-201ENST00000404566 256 ntBASIC15.66■□□□□ 0.1
COL5A1P20908 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC15.66■□□□□ 0.1
COL5A1P20908 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC15.66■□□□□ 0.1
COL5A1P20908 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC15.66■□□□□ 0.1
COL5A1P20908 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL5A1P20908 MIR4525-201ENST00000580000 75 ntBASIC15.66■□□□□ 0.1
COL5A1P20908 MIR8072-201ENST00000614241 80 ntBASIC15.66■□□□□ 0.1
COL5A1P20908 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
COL5A1P20908 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC15.66■□□□□ 0.1
COL5A1P20908 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC15.65■□□□□ 0.1
COL5A1P20908 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC15.65■□□□□ 0.1
COL5A1P20908 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL5A1P20908 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC15.65■□□□□ 0.1
COL5A1P20908 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL5A1P20908 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL5A1P20908 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL5A1P20908 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
COL5A1P20908 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
COL5A1P20908 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL5A1P20908 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL5A1P20908 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
COL5A1P20908 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC15.65■□□□□ 0.1
COL5A1P20908 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
COL5A1P20908 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
COL5A1P20908 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
COL5A1P20908 RARRES2P5-201ENST00000564013 466 ntBASIC15.65■□□□□ 0.1
COL5A1P20908 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC15.65■□□□□ 0.1
COL5A1P20908 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC15.65■□□□□ 0.1
COL5A1P20908 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
COL5A1P20908 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
COL5A1P20908 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL5A1P20908 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
COL5A1P20908 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL5A1P20908 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC15.65■□□□□ 0.1
COL5A1P20908 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL5A1P20908 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC15.65■□□□□ 0.1
COL5A1P20908 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL5A1P20908 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
COL5A1P20908 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC15.65■□□□□ 0.1
COL5A1P20908 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
COL5A1P20908 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.1
COL5A1P20908 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC15.64■□□□□ 0.1
COL5A1P20908 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
COL5A1P20908 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
COL5A1P20908 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
COL5A1P20908 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
COL5A1P20908 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
COL5A1P20908 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
COL5A1P20908 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
COL5A1P20908 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC15.64■□□□□ 0.09
COL5A1P20908 FADS2-205ENST00000517839 469 ntTSL 3 BASIC15.64■□□□□ 0.09
COL5A1P20908 AC104989.1-201ENST00000519711 778 ntBASIC15.64■□□□□ 0.09
COL5A1P20908 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC15.64■□□□□ 0.09
COL5A1P20908 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC15.64■□□□□ 0.09
COL5A1P20908 MIR6775-201ENST00000617557 69 ntBASIC15.64■□□□□ 0.09
COL5A1P20908 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
COL5A1P20908 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC15.64■□□□□ 0.09
COL5A1P20908 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC15.64■□□□□ 0.09
COL5A1P20908 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
COL5A1P20908 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
COL5A1P20908 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
COL5A1P20908 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC15.64■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms