Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
COL9A1P20849 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL9A1P20849 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC16.92■□□□□ 0.3
COL9A1P20849 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC16.92■□□□□ 0.3
COL9A1P20849 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
COL9A1P20849 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL9A1P20849 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC16.92■□□□□ 0.3
COL9A1P20849 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL9A1P20849 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
COL9A1P20849 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC16.92■□□□□ 0.3
COL9A1P20849 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
COL9A1P20849 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
COL9A1P20849 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL9A1P20849 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL9A1P20849 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL9A1P20849 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
COL9A1P20849 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC16.91■□□□□ 0.3
COL9A1P20849 GNE-204ENST00000539208 2190 ntTSL 2 BASIC16.91■□□□□ 0.3
COL9A1P20849 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
COL9A1P20849 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC16.91■□□□□ 0.3
COL9A1P20849 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL9A1P20849 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL9A1P20849 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL9A1P20849 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL9A1P20849 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
COL9A1P20849 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL9A1P20849 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL9A1P20849 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL9A1P20849 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
COL9A1P20849 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC16.91■□□□□ 0.3
COL9A1P20849 APOA1-205ENST00000375329 927 ntTSL 2 BASIC16.91■□□□□ 0.3
COL9A1P20849 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
COL9A1P20849 IGLJ3-201ENST00000390324 176 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
COL9A1P20849 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC16.91■□□□□ 0.3
COL9A1P20849 MEP1AP4-201ENST00000423244 1087 ntBASIC16.91■□□□□ 0.3
COL9A1P20849 SEC63P1-201ENST00000425785 1258 ntBASIC16.91■□□□□ 0.3
COL9A1P20849 AC005077.2-201ENST00000449786 690 ntBASIC16.91■□□□□ 0.3
COL9A1P20849 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL9A1P20849 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
COL9A1P20849 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
COL9A1P20849 ZNF890P-202ENST00000530367 1156 ntBASIC16.91■□□□□ 0.3
COL9A1P20849 TPRX2P-201ENST00000535362 881 ntBASIC16.91■□□□□ 0.3
COL9A1P20849 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC16.91■□□□□ 0.3
COL9A1P20849 ADAM3B-201ENST00000569937 840 ntBASIC16.91■□□□□ 0.3
COL9A1P20849 MIR3909-201ENST00000579518 119 ntBASIC16.91■□□□□ 0.3
COL9A1P20849 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC16.91■□□□□ 0.3
COL9A1P20849 AP003419.4-201ENST00000616071 517 ntBASIC16.91■□□□□ 0.3
COL9A1P20849 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL9A1P20849 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
COL9A1P20849 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC16.91■□□□□ 0.3
COL9A1P20849 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
COL9A1P20849 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC16.91■□□□□ 0.3
COL9A1P20849 LINC00896-202ENST00000609602 2128 ntBASIC16.91■□□□□ 0.3
COL9A1P20849 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
COL9A1P20849 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
COL9A1P20849 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL9A1P20849 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
COL9A1P20849 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL9A1P20849 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL9A1P20849 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL9A1P20849 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
COL9A1P20849 NARF-206ENST00000457415 1668 ntTSL 5 BASIC16.91■□□□□ 0.3
COL9A1P20849 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL9A1P20849 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL9A1P20849 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC16.91■□□□□ 0.3
COL9A1P20849 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
COL9A1P20849 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC16.9■□□□□ 0.3
COL9A1P20849 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
COL9A1P20849 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL9A1P20849 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL9A1P20849 SULT1A1-211ENST00000569554 1578 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL9A1P20849 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC16.9■□□□□ 0.3
COL9A1P20849 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
COL9A1P20849 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL9A1P20849 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC16.9■□□□□ 0.3
COL9A1P20849 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL9A1P20849 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC16.9■□□□□ 0.3
COL9A1P20849 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL9A1P20849 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
COL9A1P20849 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL9A1P20849 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC16.9■□□□□ 0.3
COL9A1P20849 AC007952.2-201ENST00000399091 1176 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
COL9A1P20849 AC098850.1-201ENST00000419919 790 ntBASIC16.9■□□□□ 0.3
COL9A1P20849 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC16.9■□□□□ 0.3
COL9A1P20849 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC16.9■□□□□ 0.3
COL9A1P20849 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC16.9■□□□□ 0.3
COL9A1P20849 AKR7A2P1-201ENST00000460134 915 ntBASIC16.9■□□□□ 0.3
COL9A1P20849 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC16.9■□□□□ 0.3
COL9A1P20849 CYP2A7P1-201ENST00000595391 815 ntBASIC16.9■□□□□ 0.3
COL9A1P20849 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC16.9■□□□□ 0.3
COL9A1P20849 NKG7-205ENST00000600427 520 ntTSL 3 BASIC16.9■□□□□ 0.3
COL9A1P20849 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL9A1P20849 RPSAP52-203ENST00000622976 1023 ntBASIC16.9■□□□□ 0.3
COL9A1P20849 LINC01670-203ENST00000624859 977 ntTSL 3 BASIC16.9■□□□□ 0.3
COL9A1P20849 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC16.9■□□□□ 0.3
COL9A1P20849 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL9A1P20849 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC16.9■□□□□ 0.3
COL9A1P20849 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL9A1P20849 AC134043.2-201ENST00000624206 2238 ntBASIC16.9■□□□□ 0.3
COL9A1P20849 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms