Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC16.12■□□□□ 0.17
LDLRP01130 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC16.12■□□□□ 0.17
LDLRP01130 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
LDLRP01130 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC16.12■□□□□ 0.17
LDLRP01130 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC16.12■□□□□ 0.17
LDLRP01130 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC16.12■□□□□ 0.17
LDLRP01130 MST1L-201ENST00000442552 2185 ntBASIC16.11■□□□□ 0.17
LDLRP01130 ANKRD26P3-201ENST00000454044 2748 ntBASIC16.11■□□□□ 0.17
LDLRP01130 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LDLRP01130 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
LDLRP01130 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC16.11■□□□□ 0.17
LDLRP01130 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
LDLRP01130 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
LDLRP01130 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
LDLRP01130 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
LDLRP01130 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
LDLRP01130 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
LDLRP01130 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC16.11■□□□□ 0.17
LDLRP01130 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
LDLRP01130 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LDLRP01130 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC16.11■□□□□ 0.17
LDLRP01130 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
LDLRP01130 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC16.11■□□□□ 0.17
LDLRP01130 HS6ST1P1-201ENST00000481504 1234 ntBASIC16.11■□□□□ 0.17
LDLRP01130 RNA5SP416-201ENST00000516838 111 ntBASIC16.11■□□□□ 0.17
LDLRP01130 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC16.11■□□□□ 0.17
LDLRP01130 CFL1-212ENST00000531413 636 ntTSL 3 BASIC16.11■□□□□ 0.17
LDLRP01130 AC012640.2-201ENST00000561606 901 ntBASIC16.11■□□□□ 0.17
LDLRP01130 PNMT-203ENST00000581428 677 ntTSL 2 BASIC16.11■□□□□ 0.17
LDLRP01130 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
LDLRP01130 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LDLRP01130 EGFEM1P-202ENST00000431685 1563 ntBASIC16.11■□□□□ 0.17
LDLRP01130 HLA-A-202ENST00000376806 1854 ntBASIC16.11■□□□□ 0.17
LDLRP01130 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LDLRP01130 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC16.11■□□□□ 0.17
LDLRP01130 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
LDLRP01130 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC16.11■□□□□ 0.17
LDLRP01130 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC16.11■□□□□ 0.17
LDLRP01130 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
LDLRP01130 AP005117.1-201ENST00000584346 1413 ntBASIC16.11■□□□□ 0.17
LDLRP01130 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LDLRP01130 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
LDLRP01130 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
LDLRP01130 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
LDLRP01130 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
LDLRP01130 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC16.1■□□□□ 0.17
LDLRP01130 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
LDLRP01130 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
LDLRP01130 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC16.1■□□□□ 0.17
LDLRP01130 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LDLRP01130 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
LDLRP01130 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
LDLRP01130 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LDLRP01130 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC16.1■□□□□ 0.17
LDLRP01130 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
LDLRP01130 AC096633.1-201ENST00000422446 749 ntBASIC16.1■□□□□ 0.17
LDLRP01130 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC16.1■□□□□ 0.17
LDLRP01130 AC002347.1-201ENST00000569543 541 ntBASIC16.1■□□□□ 0.17
LDLRP01130 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LDLRP01130 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC16.1■□□□□ 0.17
LDLRP01130 AL365203.3-201ENST00000609742 2057 ntBASIC16.1■□□□□ 0.17
LDLRP01130 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
LDLRP01130 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LDLRP01130 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC16.1■□□□□ 0.17
LDLRP01130 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC16.1■□□□□ 0.17
LDLRP01130 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
LDLRP01130 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
LDLRP01130 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LDLRP01130 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
LDLRP01130 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
LDLRP01130 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC16.1■□□□□ 0.17
LDLRP01130 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
LDLRP01130 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC16.1■□□□□ 0.17
LDLRP01130 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
LDLRP01130 INTS4P1-201ENST00000438455 1935 ntBASIC16.09■□□□□ 0.17
LDLRP01130 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
LDLRP01130 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC16.09■□□□□ 0.17
LDLRP01130 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC16.09■□□□□ 0.17
LDLRP01130 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC16.09■□□□□ 0.17
LDLRP01130 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
LDLRP01130 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
LDLRP01130 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC16.09■□□□□ 0.17
LDLRP01130 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC16.09■□□□□ 0.17
LDLRP01130 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC16.09■□□□□ 0.17
LDLRP01130 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
LDLRP01130 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
LDLRP01130 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC16.09■□□□□ 0.17
LDLRP01130 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC16.09■□□□□ 0.17
LDLRP01130 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
LDLRP01130 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC16.09■□□□□ 0.17
LDLRP01130 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
LDLRP01130 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
LDLRP01130 RAB17-203ENST00000409576 466 ntTSL 3 BASIC16.09■□□□□ 0.17
LDLRP01130 DANCR-204ENST00000444958 709 ntTSL 3 BASIC16.09■□□□□ 0.17
LDLRP01130 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC16.09■□□□□ 0.17
LDLRP01130 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
LDLRP01130 AC009533.2-201ENST00000543664 586 ntBASIC16.09■□□□□ 0.17
LDLRP01130 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
LDLRP01130 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
LDLRP01130 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms