Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC19.29■□□□□ 0.68
CDKL5O76039 MED16-214ENST00000617672 554 ntTSL 5 BASIC19.29■□□□□ 0.68
CDKL5O76039 AC004877.2-201ENST00000623941 599 ntBASIC19.29■□□□□ 0.68
CDKL5O76039 CAND2-206ENST00000626378 333 ntTSL 5 BASIC19.29■□□□□ 0.68
CDKL5O76039 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CDKL5O76039 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CDKL5O76039 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CDKL5O76039 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CDKL5O76039 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
CDKL5O76039 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CDKL5O76039 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CDKL5O76039 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC19.29■□□□□ 0.68
CDKL5O76039 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
CDKL5O76039 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CDKL5O76039 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC19.29■□□□□ 0.68
CDKL5O76039 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CDKL5O76039 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CDKL5O76039 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CDKL5O76039 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CDKL5O76039 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC19.28■□□□□ 0.68
CDKL5O76039 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CDKL5O76039 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC19.28■□□□□ 0.68
CDKL5O76039 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CDKL5O76039 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC19.28■□□□□ 0.68
CDKL5O76039 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC19.28■□□□□ 0.68
CDKL5O76039 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CDKL5O76039 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CDKL5O76039 MAL2-202ENST00000531508 892 ntTSL 3 BASIC19.28■□□□□ 0.68
CDKL5O76039 AC106730.1-201ENST00000566722 1090 ntBASIC19.28■□□□□ 0.68
CDKL5O76039 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC19.28■□□□□ 0.68
CDKL5O76039 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CDKL5O76039 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CDKL5O76039 AC092364.2-201ENST00000596710 2692 ntBASIC19.28■□□□□ 0.68
CDKL5O76039 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
CDKL5O76039 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC19.28■□□□□ 0.68
CDKL5O76039 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC19.28■□□□□ 0.68
CDKL5O76039 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CDKL5O76039 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CDKL5O76039 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CDKL5O76039 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CDKL5O76039 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CDKL5O76039 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CDKL5O76039 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CDKL5O76039 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC19.28■□□□□ 0.68
CDKL5O76039 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CDKL5O76039 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CDKL5O76039 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CDKL5O76039 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
CDKL5O76039 DOC2GP-204ENST00000639052 2548 ntBASIC19.27■□□□□ 0.68
CDKL5O76039 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC19.27■□□□□ 0.68
CDKL5O76039 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CDKL5O76039 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CDKL5O76039 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CDKL5O76039 AC025580.3-201ENST00000617932 1424 ntBASIC19.27■□□□□ 0.68
CDKL5O76039 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CDKL5O76039 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC19.27■□□□□ 0.68
CDKL5O76039 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC19.27■□□□□ 0.68
CDKL5O76039 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
CDKL5O76039 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
CDKL5O76039 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC19.27■□□□□ 0.68
CDKL5O76039 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
CDKL5O76039 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
CDKL5O76039 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CDKL5O76039 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CDKL5O76039 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC19.27■□□□□ 0.68
CDKL5O76039 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CDKL5O76039 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CDKL5O76039 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CDKL5O76039 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC19.27■□□□□ 0.68
CDKL5O76039 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC19.27■□□□□ 0.68
CDKL5O76039 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
CDKL5O76039 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC19.27■□□□□ 0.68
CDKL5O76039 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC19.27■□□□□ 0.68
CDKL5O76039 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC19.27■□□□□ 0.68
CDKL5O76039 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC19.27■□□□□ 0.68
CDKL5O76039 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC19.27■□□□□ 0.68
CDKL5O76039 RNA5SP416-201ENST00000516838 111 ntBASIC19.27■□□□□ 0.68
CDKL5O76039 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC19.27■□□□□ 0.68
CDKL5O76039 KRT19P2-202ENST00000557173 1012 ntBASIC19.27■□□□□ 0.68
CDKL5O76039 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC19.27■□□□□ 0.68
CDKL5O76039 AC018845.2-201ENST00000568326 409 ntBASIC19.27■□□□□ 0.68
CDKL5O76039 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC19.27■□□□□ 0.68
CDKL5O76039 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC19.27■□□□□ 0.68
CDKL5O76039 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC19.27■□□□□ 0.68
CDKL5O76039 AL009183.1-201ENST00000603760 355 ntBASIC19.27■□□□□ 0.68
CDKL5O76039 AC027601.4-201ENST00000611259 610 ntBASIC19.27■□□□□ 0.68
CDKL5O76039 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC19.27■□□□□ 0.68
CDKL5O76039 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
CDKL5O76039 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC19.27■□□□□ 0.68
CDKL5O76039 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC19.27■□□□□ 0.68
CDKL5O76039 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
CDKL5O76039 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CDKL5O76039 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC19.27■□□□□ 0.67
CDKL5O76039 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CDKL5O76039 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CDKL5O76039 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CDKL5O76039 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CDKL5O76039 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC19.26■□□□□ 0.67
CDKL5O76039 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CDKL5O76039 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC19.26■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 120.2 ms